From owner-cvs-ports@FreeBSD.ORG Sat Dec 15 15:13:41 2007 Return-Path: Delivered-To: cvs-ports@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 9EF9216A41A; Sat, 15 Dec 2007 15:13:41 +0000 (UTC) (envelope-from miwi@FreeBSD.org) Received: from repoman.freebsd.org (repoman.freebsd.org [IPv6:2001:4f8:fff6::29]) by mx1.freebsd.org (Postfix) with ESMTP id 8677A13C455; Sat, 15 Dec 2007 15:13:41 +0000 (UTC) (envelope-from miwi@FreeBSD.org) Received: from repoman.freebsd.org (localhost [127.0.0.1]) by repoman.freebsd.org (8.14.1/8.14.1) with ESMTP id lBFFDf3R050493; Sat, 15 Dec 2007 15:13:41 GMT (envelope-from miwi@repoman.freebsd.org) Received: (from miwi@localhost) by repoman.freebsd.org (8.14.1/8.14.1/Submit) id lBFFDfCA050492; Sat, 15 Dec 2007 15:13:41 GMT (envelope-from miwi) Message-Id: <200712151513.lBFFDfCA050492@repoman.freebsd.org> From: Martin Wilke Date: Sat, 15 Dec 2007 15:13:41 +0000 (UTC) To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org X-FreeBSD-CVS-Branch: HEAD Cc: Subject: cvs commit: ports/biology Makefile ports/biology/mrbayes Makefile distinfo pkg-descr ports/biology/mrbayes/files patch-Makefile X-BeenThere: cvs-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: CVS commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 15 Dec 2007 15:13:41 -0000 miwi 2007-12-15 15:13:41 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/mrbayes Makefile distinfo pkg-descr biology/mrbayes/files patch-Makefile Log: MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp Revision Changes Path 1.94 +1 -0 ports/biology/Makefile 1.1 +34 -0 ports/biology/mrbayes/Makefile (new) 1.1 +3 -0 ports/biology/mrbayes/distinfo (new) 1.1 +11 -0 ports/biology/mrbayes/files/patch-Makefile (new) 1.1 +11 -0 ports/biology/mrbayes/pkg-descr (new)