Date: Wed, 13 Feb 2019 15:53:05 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][math/py-gau2grid] Failed for py27-gau2grid-1.3.1 in build Message-ID: <201902131553.x1DFr5M1054695@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p492744_s344025/logs/py27-gau2grid-1.3.1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p492744_s344025 Log: =>> Building math/py-gau2grid build started at Wed Feb 13 15:52:14 UTC 2019 port directory: /usr/ports/math/py-gau2grid package name: py27-gau2grid-1.3.1 building for: FreeBSD head-armv6-default-job-19 13.0-CURRENT FreeBSD 13.0-CURRENT 1300010 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Poudriere version: 3.2.8 Host OSVERSION: 1300009 Jail OSVERSION: 1300010 Job Id: 19 !!! Jail is newer than host. (Jail: 1300010, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300010 UNAME_v=FreeBSD 13.0-CURRENT 1300010 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gau2grid" EXAMPLESDIR="share/examples/gau2grid" DATADIR="share/gau2grid" WWWDIR="www/gau2grid" ETCDIR="etc/gau2grid" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gau2grid DOCSDIR=/usr/local/share/doc/gau2grid EXAMPLESDIR=/usr/local/share/examples/gau2grid WWWDIR=/usr/local/www/gau2grid ETCDIR=/usr/local/etc/gau2grid --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300010 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-armv6-default-job-19] Installing pkg-1.10.5_5... [head-armv6-default-job-19] Extracting pkg-1.10.5_5: .......... done ===> py27-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-gau2grid-1.3.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user <snip> as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-gau2grid-1.3.1 depends on package: py27-numpy>0 - found ===> Returning to build of py27-gau2grid-1.3.1 ===> py27-gau2grid-1.3.1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-3.13.4.txz [head-armv6-default-job-19] Installing cmake-3.13.4... [head-armv6-default-job-19] `-- Installing curl-7.64.0_1... [head-armv6-default-job-19] | `-- Installing ca_root_nss-3.42.1... [head-armv6-default-job-19] | `-- Extracting ca_root_nss-3.42.1: ........ done [head-armv6-default-job-19] | `-- Installing libnghttp2-1.36.0... [head-armv6-default-job-19] | `-- Extracting libnghttp2-1.36.0: .......... done [head-armv6-default-job-19] `-- Extracting curl-7.64.0_1: .......... done [head-armv6-default-job-19] `-- Installing expat-2.2.6_1... [head-armv6-default-job-19] `-- Extracting expat-2.2.6_1: .......... done [head-armv6-default-job-19] `-- Installing jsoncpp-1.8.1_5... [head-armv6-default-job-19] `-- Extracting jsoncpp-1.8.1_5: .......... done [head-armv6-default-job-19] `-- Installing libarchive-3.3.3,1... [head-armv6-default-job-19] | `-- Installing liblz4-1.8.3,1... [head-armv6-default-job-19] | `-- Extracting liblz4-1.8.3,1: .......... done [head-armv6-default-job-19] | `-- Installing lzo2-2.10_1... [head-armv6-default-job-19] | `-- Extracting lzo2-2.10_1: .......... done [head-armv6-default-job-19] `-- Extracting libarchive-3.3.3,1: .......... done [head-armv6-default-job-19] `-- Installing libuv-1.26.0... [head-armv6-default-job-19] `-- Extracting libuv-1.26.0: .......... done [head-armv6-default-job-19] `-- Installing rhash-1.3.5... [head-armv6-default-job-19] `-- Extracting rhash-1.3.5: .......... done [head-armv6-default-job-19] Extracting cmake-3.13.4: .......... done Message from ca_root_nss-3.42.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> py27-gau2grid-1.3.1 depends on executable: cmake - found ===> Returning to build of py27-gau2grid-1.3.1 ===> py27-gau2grid-1.3.1 depends on file: /usr/local/bin/cmake - found ===> py27-gau2grid-1.3.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.8.2_1,2.txz [head-armv6-default-job-19] Installing ninja-1.8.2_1,2... [head-armv6-default-job-19] Extracting ninja-1.8.2_1,2: ......... done ===> py27-gau2grid-1.3.1 depends on executable: ninja - found ===> Returning to build of py27-gau2grid-1.3.1 ===> py27-gau2grid-1.3.1 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py27-gau2grid-1.3.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build -- The C compiler identification is Clang 7.0.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Setting (unspecified) option MAX_AM: 8 -- Setting (unspecified) option SPHERICAL_ORDER: gaussian -- Setting (unspecified) option CARTESIAN_ORDER: row -- Setting option MAX_AM: 8 -- Setting option CMAKE_BUILD_TYPE: Release -- Setting (unspecified) option ENABLE_XHOST: ON -- Performing Test CMAKE_C_FLAGS [-xHost] - Failed -- Performing Test CMAKE_C_FLAGS [-march=native] - Failed CMake Warning at cmake/psi4OptionsTools.cmake:94 (message): Option unfulfilled as none of -xHost;-march=native valid Call Stack (most recent call first): cmake/psi4OptionsTools.cmake:137 (add_C_or_CXX_flags) cmake/psi4OptionsTools.cmake:168 (add_C_flags) cmake/psi4OptionsTools.cmake:186 (add_flags) CMakeLists.txt:22 (option_with_flags) -- Setting (unspecified) option BUILD_FPIC: ON -- Setting (unspecified) option BUILD_SHARED_LIBS: ON -- Setting (unspecified) option ENABLE_GENERIC: OFF -- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib -- Setting option PYMOD_INSTALL_LIBDIR: /usr/local/lib/python2.7/site-packages -- Setting option INSTALL_PYMOD: ON -- Setting (unspecified) option NATIVE_PYTHON_INSTALL: OFF -- gau2grid install: /usr/local -- Found PythonInterp: /usr/local/bin/python2.7 (found suitable version "2.7.15", minimum required is "2.7") -- Found PythonLibs: /usr/local/lib/libpython2.7.so -- [36mFound Python 2.7[m: /usr/local/bin/python2.7 (found version 2.7.15) Traceback (most recent call last): File "<string>", line 1, in <module> File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import add_newdocs File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module> from numpy.lib import add_newdoc File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module> from .type_check import * File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module> import numpy.core.numeric as _nx File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module> raise ImportError(msg) ImportError: Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. If you're working with a numpy git repo, try `git clean -xdf` (removes all files not under version control). Otherwise reinstall numpy. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build =========================================================================== =======================<phase: build >============================ ===> Building for py27-gau2grid-1.3.1 [1/9] cd /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build && /usr/local/bin/python2.7 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build', cartesian_order='row', spherical_order='gaussian')" FAILED: gau2grid.h gau2grid_orbital.c gau2grid_phi.c gau2grid_deriv1.c gau2grid_deriv2.c gau2grid_spherical.c gau2grid_helper.c cd /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build && /usr/local/bin/python2.7 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build', cartesian_order='row', spherical_order='gaussian')" Traceback (most recent call last): File "<string>", line 1, in <module> File "/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1/gau2grid/__init__.py", line 5, in <module> from . import RSH File "/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1/gau2grid/RSH.py", line 10, in <module> import numpy as np File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import add_newdocs File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module> from numpy.lib import add_newdoc File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module> from .type_check import * File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module> import numpy.core.numeric as _nx File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module> raise ImportError(msg) ImportError: Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. If you're working with a numpy git repo, try `git clean -xdf` (removes all files not under version control). Otherwise reinstall numpy. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/math/py-gau2grid
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