From owner-svn-ports-all@freebsd.org Thu Sep 20 14:10:53 2018 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 0819F109DFB6; Thu, 20 Sep 2018 14:10:53 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id AFE3E8EA23; Thu, 20 Sep 2018 14:10:52 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id AAE9E1EF8D; Thu, 20 Sep 2018 14:10:52 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w8KEAqox030060; Thu, 20 Sep 2018 14:10:52 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w8KEAq33030059; Thu, 20 Sep 2018 14:10:52 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201809201410.w8KEAq33030059@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Thu, 20 Sep 2018 14:10:52 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r480173 - head/biology/py-cutadapt X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/py-cutadapt X-SVN-Commit-Revision: 480173 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 20 Sep 2018 14:10:53 -0000 Author: jwb Date: Thu Sep 20 14:10:52 2018 New Revision: 480173 URL: https://svnweb.freebsd.org/changeset/ports/480173 Log: biology/py-cutadapt: Upgrade to 1.18 Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D17099 Deleted: head/biology/py-cutadapt/pkg-plist Modified: head/biology/py-cutadapt/Makefile head/biology/py-cutadapt/distinfo (contents, props changed) Modified: head/biology/py-cutadapt/Makefile ============================================================================== --- head/biology/py-cutadapt/Makefile Thu Sep 20 14:06:19 2018 (r480172) +++ head/biology/py-cutadapt/Makefile Thu Sep 20 14:10:52 2018 (r480173) @@ -1,20 +1,22 @@ # $FreeBSD$ PORTNAME= cutadapt -PORTVERSION= 1.14 +PORTVERSION= 1.18 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org -COMMENT= Finds and removes adapter sequences, primers, poly-A tails, etc +COMMENT= Trim adapters from high-throughput sequencing reads LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>0:archivers/py-xopen@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} USES= python -USE_PYTHON= distutils py3kplist +USE_PYTHON= autoplist concurrent distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so Modified: head/biology/py-cutadapt/distinfo ============================================================================== --- head/biology/py-cutadapt/distinfo Thu Sep 20 14:06:19 2018 (r480172) +++ head/biology/py-cutadapt/distinfo Thu Sep 20 14:10:52 2018 (r480173) @@ -1,3 +1,3 @@ -TIMESTAMP = 1509552013 -SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d -SIZE (cutadapt-1.14.tar.gz) = 283631 +TIMESTAMP = 1536508727 +SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9 +SIZE (cutadapt-1.18.tar.gz) = 342050