From owner-freebsd-ports-bugs@freebsd.org  Sat Nov 14 05:22:54 2015
Return-Path: <owner-freebsd-ports-bugs@freebsd.org>
Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org
Received: from mx1.freebsd.org (mx1.freebsd.org
 [IPv6:2001:1900:2254:206a::19:1])
 by mailman.ysv.freebsd.org (Postfix) with ESMTP id C2A0BA2F7A9
 for <freebsd-ports-bugs@mailman.ysv.freebsd.org>;
 Sat, 14 Nov 2015 05:22:54 +0000 (UTC)
 (envelope-from bugzilla-noreply@freebsd.org)
Received: from kenobi.freebsd.org (kenobi.freebsd.org
 [IPv6:2001:1900:2254:206a::16:76])
 (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits))
 (Client did not present a certificate)
 by mx1.freebsd.org (Postfix) with ESMTPS id AE44C1119
 for <freebsd-ports-bugs@FreeBSD.org>; Sat, 14 Nov 2015 05:22:54 +0000 (UTC)
 (envelope-from bugzilla-noreply@freebsd.org)
Received: from bugs.freebsd.org ([127.0.1.118])
 by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id tAE5Ms9C061739
 for <freebsd-ports-bugs@FreeBSD.org>; Sat, 14 Nov 2015 05:22:54 GMT
 (envelope-from bugzilla-noreply@freebsd.org)
From: bugzilla-noreply@freebsd.org
To: freebsd-ports-bugs@FreeBSD.org
Subject: [Bug 204536] New port: biology/bedtools Toolset for genome arithmetic
Date: Sat, 14 Nov 2015 05:22:54 +0000
X-Bugzilla-Reason: AssignedTo
X-Bugzilla-Type: new
X-Bugzilla-Watch-Reason: None
X-Bugzilla-Product: Ports & Packages
X-Bugzilla-Component: Individual Port(s)
X-Bugzilla-Version: Latest
X-Bugzilla-Keywords: 
X-Bugzilla-Severity: Affects Only Me
X-Bugzilla-Who: scottcheloha@gmail.com
X-Bugzilla-Status: New
X-Bugzilla-Priority: ---
X-Bugzilla-Assigned-To: freebsd-ports-bugs@FreeBSD.org
X-Bugzilla-Target-Milestone: ---
X-Bugzilla-Flags: 
X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform
 op_sys bug_status bug_severity priority component assigned_to reporter
 attachments.created
Message-ID: <bug-204536-13@https.bugs.freebsd.org/bugzilla/>
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: 7bit
X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/
Auto-Submitted: auto-generated
MIME-Version: 1.0
X-BeenThere: freebsd-ports-bugs@freebsd.org
X-Mailman-Version: 2.1.20
Precedence: list
List-Id: Ports bug reports <freebsd-ports-bugs.freebsd.org>
List-Unsubscribe: <https://lists.freebsd.org/mailman/options/freebsd-ports-bugs>, 
 <mailto:freebsd-ports-bugs-request@freebsd.org?subject=unsubscribe>
List-Archive: <http://lists.freebsd.org/pipermail/freebsd-ports-bugs/>
List-Post: <mailto:freebsd-ports-bugs@freebsd.org>
List-Help: <mailto:freebsd-ports-bugs-request@freebsd.org?subject=help>
List-Subscribe: <https://lists.freebsd.org/mailman/listinfo/freebsd-ports-bugs>, 
 <mailto:freebsd-ports-bugs-request@freebsd.org?subject=subscribe>
X-List-Received-Date: Sat, 14 Nov 2015 05:22:54 -0000

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=204536

            Bug ID: 204536
           Summary: New port: biology/bedtools Toolset for genome
                    arithmetic
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs@FreeBSD.org
          Reporter: scottcheloha@gmail.com

Created attachment 163109
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=163109&action=edit
shar(1) of biology/bedtools; Makefile, distinfo, pkg-plist, pkg-descr, and a
small patch in files/

Bedtools performs common set arithmetic tasks on genomes.  Each subtool
performs a relatively simple task---intersection, complementation, etc.---on
the input genome(s), and arbitrarily complex manipulations and analyses are
possible through the creation of shell scripts that string these operations
together.

-- 
You are receiving this mail because:
You are the assignee for the bug.