From owner-freebsd-pkg-fallout@freebsd.org Sat Aug 22 09:21:03 2020 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 07AD93B42D4 for ; Sat, 22 Aug 2020 09:21:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (mailman.nyi.freebsd.org [IPv6:2610:1c1:1:606c::50:13]) by mx1.freebsd.org (Postfix) with ESMTP id 4BYXtk6kRsz4NW2 for ; Sat, 22 Aug 2020 09:21:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id E6DF13B40FB; Sat, 22 Aug 2020 09:21:02 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E69983B449E for ; Sat, 22 Aug 2020 09:21:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BYXtk6C5Sz4NdX for ; Sat, 22 Aug 2020 09:21:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B818314413 for ; Sat, 22 Aug 2020 09:21:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id 07M9L23b091292 for ; Sat, 22 Aug 2020 09:21:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id 07M9L2pL091291; Sat, 22 Aug 2020 09:21:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sat, 22 Aug 2020 09:21:02 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202008220921.07M9L2pL091291@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/apbs] Failed for apbs-1.5.102 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 22 Aug 2020 09:21:03 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/apbs/Makefile 500699 2019-05-03 06:15:44Z yuri $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p545479_s364329/logs/apbs-1.5.102.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p545479_s364329 Log: =>> Building science/apbs build started at Sat Aug 22 09:19:19 UTC 2020 port directory: /usr/ports/science/apbs package name: apbs-1.5.102 building for: FreeBSD head-armv6-default-job-10 13.0-CURRENT FreeBSD 13.0-CURRENT 1300109 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/apbs/Makefile 500699 2019-05-03 06:15:44Z yuri $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300109 Job Id: 10 !!! Jail is newer than host. (Jail: 1300109, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300109 UNAME_v=FreeBSD 13.0-CURRENT 1300109 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/apbs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/apbs" EXAMPLESDIR="share/examples/apbs" DATADIR="share/apbs" WWWDIR="www/apbs" ETCDIR="etc/apbs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/apbs DOCSDIR=/usr/local/share/doc/apbs EXAMPLESDIR=/usr/local/share/examples/apbs WWWDIR=/usr/local/www/apbs ETCDIR=/usr/local/etc/apbs --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300109 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MIT accepted by the user =========================================================================== =================================================== ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.7.txz [head-armv6-default-job-10] Installing pkg-1.14.7... [head-armv6-default-job-10] Extracting pkg-1.14.7: .......... done ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of apbs-1.5.102 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by apbs-1.5.102 for building =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by apbs-1.5.102 for building => SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz. [36/102] /nxb-bin/usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/ge 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-MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/viofb.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/viofb.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys /viofb.c [46/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vmem.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vmem.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vmem.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vm em.c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:179:9: warning: format specifies type 'long' but the argument has type 'unsigned int' [-Wformat] (vmemTotal.mallocBytes-vmemTotal.freeBytes), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:180:9: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemTotal.mallocAreas, vmemTotal.mallocBytes, ^~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:180:32: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemTotal.mallocAreas, vmemTotal.mallocBytes, ^~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:181:9: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemTotal.freeBytes, vmemTotal.highWater, ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:181:30: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemTotal.freeBytes, vmemTotal.highWater, ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:445:13: warning: format specifies type 'long' but the argument has type 'unsigned int' [-Wformat] (thee->mallocBytes-thee->freeBytes), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:446:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] thee->mallocAreas, thee->mallocBytes, ^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:446:32: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] thee->mallocAreas, thee->mallocBytes, ^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:447:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] thee->freeBytes, thee->highWater, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:447:30: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] thee->freeBytes, thee->highWater, ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:451:13: warning: format specifies type 'long' but the argument has type 'unsigned int' [-Wformat] (vmemMisc.mallocBytes-vmemMisc.freeBytes), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:452:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemMisc.mallocAreas, vmemMisc.mallocBytes, ^~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:452:35: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemMisc.mallocAreas, vmemMisc.mallocBytes, ^~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:453:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemMisc.freeBytes, vmemMisc.highWater, ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:453:33: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat] vmemMisc.freeBytes, vmemMisc.highWater, ^~~~~~~~~~~~~~~~~~ 15 warnings generated. 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externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk /maloc/src/base/maloc_base.c [53/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/psh.c [54/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vcom.c [55/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vmp.c [56/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vmpi.c [57/102] /nxb-bin/usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh/vlex.c [58/102] : && /nxb-bin/usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libmaloc.so -o /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vpars.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vpup.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vsh.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vyacc.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vio.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vio fb.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vmem.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnm.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnmfb.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vpred.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vset.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/ziofb.c.o && : [59/102] : && /nxb-bin/usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_generic.so -o lib/libapbs_generic.so src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o src/generic/CMakeFiles/apbs_generic.dir/valist.c.o src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o src/generic/CMakeFiles/ apbs_generic.dir/vstring.c.o src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && : [60/102] : && /nxb-bin/usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_pmgc.so -o lib/libapbs_pmgc.so src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o src/pmgc/CMakeFiles/apbs_pmgc.d ir/mgfasd.c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && : FAILED: lib/libapbs_pmgc.so : && /nxb-bin/usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_pmgc.so -o lib/libapbs_pmgc.so src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd .c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && : ld: error: duplicate symbol: charge >>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(charge) >>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x48) ld: error: duplicate symbol: conc1 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc1) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x18) ld: error: duplicate symbol: conc2 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc2) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x20) ld: error: duplicate symbol: conc3 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc3) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x28) ld: error: duplicate symbol: nion >>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(nion) >>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x40) ld: error: duplicate symbol: relSize >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(relSize) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x38) ld: error: duplicate symbol: sconc >>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(sconc) >>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x1D8) ld: error: duplicate symbol: v1 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v1) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x0) ld: error: duplicate symbol: v2 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v2) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x8) ld: error: duplicate symbol: v3 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v3) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x10) ld: error: duplicate symbol: vol >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(vol) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x30) ld: error: duplicate symbol: charge >>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(charge) >>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x48) ld: error: duplicate symbol: conc1 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc1) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x18) ld: error: duplicate symbol: conc2 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc2) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x20) ld: error: duplicate symbol: conc3 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc3) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x28) ld: error: duplicate symbol: nion >>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(nion) >>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x40) ld: error: duplicate symbol: relSize >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(relSize) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x38) ld: error: duplicate symbol: sconc >>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(sconc) >>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x1D8) ld: error: duplicate symbol: v1 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v1) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x0) ld: error: duplicate symbol: v2 >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v2) >>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70) >>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x8) ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) cc: error: linker command failed with exit code 1 (use -v to see invocation) ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/apbs