From owner-svn-ports-all@freebsd.org Wed Feb 20 20:46:39 2019 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 398AF14DB1F7; Wed, 20 Feb 2019 20:46:39 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id C15646CB0C; Wed, 20 Feb 2019 20:46:38 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B2E86AD1F; Wed, 20 Feb 2019 20:46:38 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x1KKkcTh081935; Wed, 20 Feb 2019 20:46:38 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x1KKkb40081927; Wed, 20 Feb 2019 20:46:37 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <201902202046.x1KKkb40081927@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Wed, 20 Feb 2019 20:46:37 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r493444 - in head/biology: . p5-Bio-Cluster X-SVN-Group: ports-head X-SVN-Commit-Author: sunpoet X-SVN-Commit-Paths: in head/biology: . p5-Bio-Cluster X-SVN-Commit-Revision: 493444 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: C15646CB0C X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.97 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.97)[-0.975,0]; NEURAL_HAM_LONG(-1.00)[-0.999,0] X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 20 Feb 2019 20:46:39 -0000 Author: sunpoet Date: Wed Feb 20 20:46:37 2019 New Revision: 493444 URL: https://svnweb.freebsd.org/changeset/ports/493444 Log: Add p5-Bio-Cluster 1.7.3 Bio::Cluster is the BioPerl cluster modules. Classes and modules here describe the basic structure for a cluster of BioPerl objects. WWW: https://metacpan.org/release/Bio-Cluster Added: head/biology/p5-Bio-Cluster/ head/biology/p5-Bio-Cluster/Makefile (contents, props changed) head/biology/p5-Bio-Cluster/distinfo (contents, props changed) head/biology/p5-Bio-Cluster/pkg-descr (contents, props changed) head/biology/p5-Bio-Cluster/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Wed Feb 20 20:34:50 2019 (r493443) +++ head/biology/Makefile Wed Feb 20 20:46:37 2019 (r493444) @@ -77,6 +77,7 @@ SUBDIR += ngs-sdk SUBDIR += p5-AcePerl SUBDIR += p5-Bio-ASN1-EntrezGene + SUBDIR += p5-Bio-Cluster SUBDIR += p5-Bio-Coordinate SUBDIR += p5-Bio-Das SUBDIR += p5-Bio-Das-Lite Added: head/biology/p5-Bio-Cluster/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Cluster/Makefile Wed Feb 20 20:46:37 2019 (r493444) @@ -0,0 +1,27 @@ +# Created by: Po-Chuan Hsieh +# $FreeBSD$ + +PORTNAME= Bio-Cluster +PORTVERSION= 1.7.3 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= BioPerl cluster modules + +LICENSE= ART10 GPLv1+ +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +#TODO: Add Bio::Variation::SNP +BUILD_DEPENDS= ${RUN_DEPENDS} +RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \ + p5-XML-SAX>=0:textproc/p5-XML-SAX + +USES= perl5 +USE_PERL5= configure + +NO_ARCH= yes + +.include Added: head/biology/p5-Bio-Cluster/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Cluster/distinfo Wed Feb 20 20:46:37 2019 (r493444) @@ -0,0 +1,3 @@ +TIMESTAMP = 1549712664 +SHA256 (Bio-Cluster-1.7.3.tar.gz) = 1967fb3899b92f245b5bf6cb64ef076fc3f8427b1a96ca5f7b74d220b6191fbb +SIZE (Bio-Cluster-1.7.3.tar.gz) = 58304 Added: head/biology/p5-Bio-Cluster/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Cluster/pkg-descr Wed Feb 20 20:46:37 2019 (r493444) @@ -0,0 +1,4 @@ +Bio::Cluster is the BioPerl cluster modules. Classes and modules here describe +the basic structure for a cluster of BioPerl objects. + +WWW: https://metacpan.org/release/Bio-Cluster Added: head/biology/p5-Bio-Cluster/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Cluster/pkg-plist Wed Feb 20 20:46:37 2019 (r493444) @@ -0,0 +1,20 @@ +%%SITE_PERL%%/Bio/Cluster.pm +%%SITE_PERL%%/Bio/Cluster/ClusterFactory.pm +%%SITE_PERL%%/Bio/Cluster/FamilyI.pm +%%SITE_PERL%%/Bio/Cluster/SequenceFamily.pm +%%SITE_PERL%%/Bio/Cluster/UniGene.pm +%%SITE_PERL%%/Bio/Cluster/UniGeneI.pm +%%SITE_PERL%%/Bio/ClusterI.pm +%%SITE_PERL%%/Bio/ClusterIO.pm +%%SITE_PERL%%/Bio/ClusterIO/dbsnp.pm +%%SITE_PERL%%/Bio/ClusterIO/unigene.pm +%%PERL5_MAN3%%/Bio::Cluster.3.gz +%%PERL5_MAN3%%/Bio::Cluster::ClusterFactory.3.gz +%%PERL5_MAN3%%/Bio::Cluster::FamilyI.3.gz +%%PERL5_MAN3%%/Bio::Cluster::SequenceFamily.3.gz +%%PERL5_MAN3%%/Bio::Cluster::UniGene.3.gz +%%PERL5_MAN3%%/Bio::Cluster::UniGeneI.3.gz +%%PERL5_MAN3%%/Bio::ClusterI.3.gz +%%PERL5_MAN3%%/Bio::ClusterIO.3.gz +%%PERL5_MAN3%%/Bio::ClusterIO::dbsnp.3.gz +%%PERL5_MAN3%%/Bio::ClusterIO::unigene.3.gz