Date: Thu, 4 Apr 2019 21:45:11 GMT From: pkg-fallout@FreeBSD.org To: jwb@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][science/afni] Failed for afni-2015.11.13_8 in build Message-ID: <201904042145.x34LjBEl019635@beefy11.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://beefy11.nyi.freebsd.org/data/head-i386-default/p497780_s345864/logs/afni-2015.11.13_8.log Build URL: http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p497780_s345864 Log: =>> Building science/afni build started at Thu Apr 4 21:24:23 UTC 2019 port directory: /usr/ports/science/afni package name: afni-2015.11.13_8 building for: FreeBSD head-i386-default-job-03 13.0-CURRENT FreeBSD 13.0-CURRENT 1300017 i386 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1300017 Job Id: 03 !!! Jail is newer than host. (Jail: 1300017, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1300017 UNAME_v=FreeBSD 13.0-CURRENT 1300017 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for afni-2015.11.13_8: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- CC="cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm -lXp" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" -fstack-protector " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -DLIBICONV_PLUG " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN= "install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/afni" EXAMPLESDIR="share/examples/afni" DATADIR="share/afni" WWWDIR="www/afni" ETCDIR="etc/afni" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/afni DOCSDIR=/usr/local/share/doc/afni EXAMPLESDIR=/usr/local/share/examples/afni WWWDIR=/usr/local/www/afni ETCDIR=/usr/local/etc/afni --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300017 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-i386-default-job-03] Installing pkg-1.10.5_5... [head-i386-default-job-03] Extracting pkg-1.10.5_5: .......... done ===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of afni-2015.11.13_8 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by afni-2015.11.13_8 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by afni-2015.11.13_8 for building => SHA256 Checksum OK for afni-2015.11.13.tar.xz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by afni-2015.11.13_8 for building ===> Extracting for afni-2015.11.13_8 => SHA256 Checksum OK for afni-2015.11.13.tar.xz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ <snip> if( (Fname_input == NULL) ) { ~~~~~~~~~~~~^~~~~~~ 1dDW_Grad_o_Mat.c:458:21: note: remove extraneous parentheses around the comparison to silence this warning if( (Fname_input == NULL) ) { ~ ^ ~ 1dDW_Grad_o_Mat.c:458:21: note: use '=' to turn this equality comparison into an assignment if( (Fname_input == NULL) ) { ^~ = 1dDW_Grad_o_Mat.c:463:22: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if( (Fname_output == NULL) ) { ~~~~~~~~~~~~~^~~~~~~ 1dDW_Grad_o_Mat.c:463:22: note: remove extraneous parentheses around the comparison to silence this warning if( (Fname_output == NULL) ) { ~ ^ ~ 1dDW_Grad_o_Mat.c:463:22: note: use '=' to turn this equality comparison into an assignment if( (Fname_output == NULL) ) { ^~ = 2 warnings generated. /bin/rm -f 1dDW_Grad_o_Mat cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 1dDW_Grad_o_Mat 1dDW_Grad_o_Mat.o ../parser.o ../parser_int.o \ -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib \ -s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \ -lgsl -lgslcblas -lm cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -c 3dEigsToDT.c 3dEigsToDT.c:376:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if( (mskd2 == NULL)) { ~~~~~~^~~~~~~ 3dEigsToDT.c:376:15: note: remove extraneous parentheses around the comparison to silence this warning if( (mskd2 == NULL)) { ~ ^ ~ 3dEigsToDT.c:376:15: note: use '=' to turn this equality comparison into an assignment if( (mskd2 == NULL)) { ^~ = 3dEigsToDT.c:401:14: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] if( fabs(THD_get_voxel(EVALS[0],k,0) > EPS_V) ) ^ 3dEigsToDT.c:401:14: note: use function 'abs' instead if( fabs(THD_get_voxel(EVALS[0],k,0) > EPS_V) ) ^~~~ abs 2 warnings generated. /bin/rm -f 3dEigsToDT cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dEigsToDT 3dEigsToDT.o ../parser.o ../parser_int.o \ -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib \ -s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \ -lgsl -lgslcblas -lm cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -c 3dDTtoNoisyDWI.c 3dDTtoNoisyDWI.c:300:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if( (mskd2 == NULL)) { ~~~~~~^~~~~~~ 3dDTtoNoisyDWI.c:300:15: note: remove extraneous parentheses around the comparison to silence this warning if( (mskd2 == NULL)) { ~ ^ ~ 3dDTtoNoisyDWI.c:300:15: note: use '=' to turn this equality comparison into an assignment if( (mskd2 == NULL)) { ^~ = 3dDTtoNoisyDWI.c:324:14: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] if( fabs(THD_get_voxel(DTS,k,0) > EPS_V) ) ^ 3dDTtoNoisyDWI.c:324:14: note: use function 'abs' instead if( fabs(THD_get_voxel(DTS,k,0) > EPS_V) ) ^~~~ abs 2 warnings generated. /bin/rm -f 3dDTtoNoisyDWI cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dDTtoNoisyDWI 3dDTtoNoisyDWI.o ../parser.o ../parser_int.o \ -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib \ -s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \ -lgsl -lgslcblas -lm cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -c 3dTORTOISEtoHere.c /bin/rm -f 3dTORTOISEtoHere cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dTORTOISEtoHere 3dTORTOISEtoHere.o ../parser.o ../parser_int.o \ -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/ -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib \ -s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \ -lgsl -lgslcblas -lm gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/ptaylor' /bin/rm -f plug_clust.so cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c plug_clust.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI In file included from plug_clust.c:7: In file included from ./afni.h:1576: ./afni_setup.h:7:9: warning: '_AFNI_SETUP_HEADER_' is used as a header guard here, followed by #define of a different macro [-Wheader-guard] #ifndef _AFNI_SETUP_HEADER_ ^~~~~~~~~~~~~~~~~~~ ./afni_setup.h:8:9: note: '_AFNI_SETUP_HEADER' is defined here; did you mean '_AFNI_SETUP_HEADER_'? #define _AFNI_SETUP_HEADER ^~~~~~~~~~~~~~~~~~ _AFNI_SETUP_HEADER_ 1 warning generated. ld -shared -o plug_clust.so plug_clust.o ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.11 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.10 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.9 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: relocation R_386_PC32 cannot be used against symbol new_PLUGIN_interface_1999; recompile with -fPIC >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.10 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: relocation R_386_PC32 cannot be used against symbol PLUTO_add_hint; recompile with -fPIC >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.12 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: relocation R_386_PC32 cannot be used against symbol PLUTO_set_sequence; recompile with -fPIC >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output >>> defined in plug_clust.o >>> referenced by plug_clust.c >>> plug_clust.o:(PLUGIN_init) ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) gmake[1]: *** [Makefile.INCLUDE:2376: plug_clust.so] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13' *** Error code 1 Stop. make: stopped in /usr/ports/science/afni
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