From owner-freebsd-pkg-fallout@freebsd.org Tue May 24 15:58:33 2016 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 6E604B483CB for ; Tue, 24 May 2016 15:58:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 5D6C01054 for ; Tue, 24 May 2016 15:58:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 5CB86B483C9; Tue, 24 May 2016 15:58:33 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 5C505B483C8 for ; Tue, 24 May 2016 15:58:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy2.nyi.freebsd.org (beefy2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e5]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 0DA881053; Tue, 24 May 2016 15:58:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy2.nyi.freebsd.org (localhost [127.0.0.1]) by beefy2.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id u4OFwW9T019231; Tue, 24 May 2016 15:58:32 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy2.nyi.freebsd.org (8.15.2/8.15.2/Submit) id u4OFwWG0019208; Tue, 24 May 2016 15:58:32 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 24 May 2016 15:58:32 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201605241558.u4OFwWG0019208@beefy2.nyi.freebsd.org> To: bf@FreeBSD.org Subject: [package - 93amd64-default][math/R-cran-SuppDists] Failed for R-cran-SuppDists-1.1.9.1_2 in stage Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.22 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 24 May 2016 15:58:33 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bf@FreeBSD.org Last committer: mat@FreeBSD.org Ident: $FreeBSD: head/math/R-cran-SuppDists/Makefile 386312 2015-05-14 10:15:04Z mat $ Log URL: http://beefy2.nyi.freebsd.org/data/93amd64-default/415751/logs/R-cran-SuppDists-1.1.9.1_2.log Build URL: http://beefy2.nyi.freebsd.org/build.html?mastername=93amd64-default&build=415751 Log: ====>> Building math/R-cran-SuppDists build started at Tue May 24 15:57:33 UTC 2016 port directory: /usr/ports/math/R-cran-SuppDists building for: FreeBSD 93amd64-default-job-05 9.3-RELEASE-p42 FreeBSD 9.3-RELEASE-p42 amd64 maintained by: bf@FreeBSD.org Makefile ident: $FreeBSD: head/math/R-cran-SuppDists/Makefile 386312 2015-05-14 10:15:04Z mat $ Poudriere version: 3.1.12 Host OSVERSION: 1100109 Jail OSVERSION: 903000 ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 9.3-RELEASE-p42 UNAME_r=9.3-RELEASE-p42 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/93amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-SuppDists-1.1.9.1_2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/93amd64-default/ref/.p/pool MASTERNAME=93amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes OSVERSION=903000 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/SuppDists OSREL=9.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/SuppDists" EXAMPLESDIR="share/examples/SuppDists" DATADIR="share/SuppDists" WWWDIR="www/SuppDists" ETCDIR="etc/SuppDists" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/SuppDists DOCSDIR=/usr/local/share/doc/SuppDists EXAMPLESDIR=/usr/local/share/examples/SuppDists WWWDIR=/usr/local/www/SuppDists ETCDIR=/usr/local/etc/SuppDists --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.3.txz [93amd64-default-job-05] Installing pkg-1.8.3... [93amd64-default-job-05] Extracting pkg-1.8.3: .......... done ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-SuppDists-1.1.9.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building => SHA256 Checksum OK for SuppDists_1.1-9.1.tar.gz. => SHA256 Checksum OK for R-benchmark-25.R. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building ===> Extracting for R-cran-SuppDists-1.1.9.1_2 => SHA256 Checksum OK for SuppDists_1.1-9.1.tar.gz. => SHA256 Checksum OK for R-benchmark-25.R. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-SuppDists-1.1.9.1_2 =========================================================================== =================================================== ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.0.txz [93amd64-default-job-05] Installing R-3.3.0... [93amd64-default-job-05] `-- Installing indexinfo-0.2.4... [93amd64-default-job-05] `-- Extracting indexinfo-0.2.4: .... done [93amd64-default-job-05] `-- Installing libXt-1.1.5,1... [93amd64-default-job-05] | `-- Installing xproto-7.0.28... [93amd64-default-job-05] | `-- Extracting xproto-7.0.28: .......... done [93amd64-default-job-05] | `-- Installing libSM-1.2.2_3,1... [93amd64-default-job-05] | | `-- Installing libICE-1.0.9_1,1... [93amd64-default-job-05] | | `-- Extracting libICE-1.0.9_1,1: .......... done [93amd64-default-job-05] | `-- Extracting libSM-1.2.2_3,1: .......... done [93amd64-default-job-05] | `-- Installing libX11-1.6.3,1... [93amd64-default-job-05] | | `-- Installing kbproto-1.0.7... [93amd64-default-job-05] | | `-- Extracting kbproto-1.0.7: .......... done [93amd64-default-job-05] | | `-- Installing libXdmcp-1.1.2... [93amd64-default-job-05] | | `-- Extracting libXdmcp-1.1.2: ......... done [93amd64-default-job-05] | | `-- Installing libxcb-1.11.1... 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[93amd64-default-job-05] | | `-- Extracting font-util-1.3.1: .......... done [93amd64-default-job-05] | `-- Extracting encodings-1.0.4_3,1: .......... done [93amd64-default-job-05] | `-- Installing fontconfig-2.11.1_2,1... [93amd64-default-job-05] | | `-- Installing expat-2.1.1... [93amd64-default-job-05] | | `-- Extracting expat-2.1.1: .......... done [93amd64-default-job-05] | | `-- Installing freetype2-2.6.3... [93amd64-default-job-05] | | `-- Extracting freetype2-2.6.3: .......... done [93amd64-default-job-05] | `-- Extracting fontconfig-2.11.1_2,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory Re-scanning /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs Re-scanning /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [93amd64-default-job-05] | `-- Installing libXft-2.3.2_1... [93amd64-default-job-05] | | `-- Installing libXrender-0.9.9... [93amd64-default-job-05] | | `-- Installing renderproto-0.11.1... [93amd64-default-job-05] | | `-- Extracting renderproto-0.11.1: .... done [93amd64-default-job-05] | | `-- Extracting libXrender-0.9.9: .......... done [93amd64-default-job-05] | `-- Extracting libXft-2.3.2_1: ......... done [93amd64-default-job-05] | `-- Installing harfbuzz-1.2.3... [93amd64-default-job-05] | | `-- Installing cairo-1.14.6,2... [93amd64-default-job-05] | | `-- Installing dri2proto-2.8... [93amd64-default-job-05] | | `-- Extracting dri2proto-2.8: .... done [93amd64-default-job-05] | | `-- Installing glproto-1.4.17... [93amd64-default-job-05] | | `-- Extracting glproto-1.4.17: ...... done [93amd64-default-job-05] | | `-- Installing libXext-1.3.3_1,1... [93amd64-default-job-05] | | | `-- Installing xextproto-7.3.0... 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Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. [93amd64-default-job-05] | `-- Extracting cups-2.1.3_2: .......... done [93amd64-default-job-05] | `-- Installing lcms2-2.7_2... [93amd64-default-job-05] | | `-- Installing jpeg-turbo-1.4.2... [93amd64-default-job-05] | | `-- Extracting jpeg-turbo-1.4.2: .......... done [93amd64-default-job-05] | | `-- Installing tiff-4.0.6_1... [93amd64-default-job-05] | | `-- Installing jbigkit-2.1_1... [93amd64-default-job-05] | | `-- Extracting jbigkit-2.1_1: .......... done [93amd64-default-job-05] | | `-- Extracting tiff-4.0.6_1: .......... done [93amd64-default-job-05] | `-- Extracting lcms2-2.7_2: .......... done [93amd64-default-job-05] | `-- Installing gsfonts-8.11_6... [93amd64-default-job-05] | `-- Extracting gsfonts-8.11_6: .......... done [93amd64-default-job-05] `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done [93amd64-default-job-05] `-- Installing tk86-8.6.5... 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Message from python27-2.7.11_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.20.3_13: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from ca_root_nss-3.22.2: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.13: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupadd _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-SuppDists-1.1.9.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for R-cran-SuppDists-1.1.9.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - found =========================================================================== =================================================== ===> Staging for R-cran-SuppDists-1.1.9.1_2 ===> Generating temporary packing list * installing *source* package 'SuppDists' ... ** package 'SuppDists' successfully unpacked and MD5 sums checked ** libs g++48 -I/usr/local/lib/R/include -DNDEBUG -I/usr/local/include -fpic -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc48 -c dists.cc -o dists.o In file included from /usr/local/lib/gcc48/include/c++/cmath:42:0, from /usr/local/lib/R/include/R.h:43, from dists.cc:10: /usr/local/lib/gcc48/include/c++/bits/cpp_type_traits.h:213:12: error: redefinition of 'struct std::__is_integer' struct __is_integer ^ /usr/local/lib/gcc48/include/c++/bits/cpp_type_traits.h:146:12: error: previous definition of 'struct std::__is_integer' struct __is_integer ^ *** [dists.o] Error code 1 Stop in /wrkdirs/usr/ports/math/R-cran-SuppDists/work/SuppDists/src. ERROR: compilation failed for package 'SuppDists' * removing '/wrkdirs/usr/ports/math/R-cran-SuppDists/work/stage/usr/local/lib/R/library/SuppDists' *** [do-install] Error code 1 Stop in /usr/ports/math/R-cran-SuppDists.