Date: Wed, 12 Mar 2014 08:49:38 GMT From: pkg-fallout-builder@FreeBSD.org To: h2+fbsdports@fsfe.org Cc: pkg-fallout@FreeBSD.org Subject: [REL - 10i386-quarterly][biology/ugene] Failed for ugene-1.12.3 in checksum Message-ID: <201403120849.s2C8ncuY094289@beefy1.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: danfe@FreeBSD.org Ident: $FreeBSD: branches/2014Q1/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $ Log URL: http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2014-03-12_01h01m59s/logs/ugene-1.12.3.log Build URL: http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2014-03-12_01h01m59s Log: ====>> Building biology/ugene build started at Wed Mar 12 08:49:30 UTC 2014 port directory: /usr/ports/biology/ugene building for: FreeBSD 10i386-quarterly-job-01 10.0-RELEASE FreeBSD 10.0-RELEASE i386 maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: branches/2014Q1/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1000510 UNAME_v=FreeBSD 10.0-RELEASE UNAME_r=10.0-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/10i386-quarterly/ref PKG_EXT=txz tpid=90571 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=ugene-1.12.3 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=10i386-quarterly USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ugene-1.12.3: DOCS=on: Install official UGENE documentation (PDF) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-libs=/usr/local/lib --with-extra-includes=/usr/local/include --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" MOC="/usr/local/bin/moc-qt4" UIC="/usr/local/bin/uic-qt4" LIBS="" QMAKE="/usr/local/bin/qmake-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-clang" QTDIR="/usr/local" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-clang" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for ugene-1.12.3 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> ugene-1.12.3 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.6.txz Installing pkg-1.2.6... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of ugene-1.12.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.12.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.12.3 for building => SHA256 Checksum OK for ugene/ugene-1.12.3.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum mismatch for ugene/WorkflowDesigner_UserManual.pdf. ===> Refetch for 1 more times files: ugene/WorkflowDesigner_UserManual.pdf ===> License GPLv2 accepted by the user => WorkflowDesigner_UserManual.pdf doesn't seem to exist in /distfiles/ugene. => Attempting to fetch http://ugene.unipro.ru/downloads/WorkflowDesigner_UserManual.pdf fetch: http://ugene.unipro.ru/downloads/WorkflowDesigner_UserManual.pdf: size mismatch: expected 1288440, actual 8963233 => Attempting to fetch ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/ugene/WorkflowDesigner_UserManual.pdf fetch: ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/ugene/WorkflowDesigner_UserManual.pdf: File unavailable (e.g., file not found, no access) => Couldn't fetch it - please try to retrieve this => port manually into /distfiles/ugene and try again. *** Error code 1 Stop. make[1]: stopped in /usr/ports/biology/ugene *** Error code 1 Stop. make: stopped in /usr/ports/biology/ugene ===> Cleaning for ugene-1.12.3
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