From owner-cvs-all@FreeBSD.ORG Sun Apr 6 04:49:06 2008 Return-Path: Delivered-To: cvs-all@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 9043C1065677; Sun, 6 Apr 2008 04:49:06 +0000 (UTC) (envelope-from rafan@FreeBSD.org) Received: from repoman.freebsd.org (repoman.freebsd.org [IPv6:2001:4f8:fff6::29]) by mx1.freebsd.org (Postfix) with ESMTP id 6E66B8FC33; Sun, 6 Apr 2008 04:49:06 +0000 (UTC) (envelope-from rafan@FreeBSD.org) Received: from repoman.freebsd.org (localhost [127.0.0.1]) by repoman.freebsd.org (8.14.1/8.14.1) with ESMTP id m364n6oF011793; Sun, 6 Apr 2008 04:49:06 GMT (envelope-from rafan@repoman.freebsd.org) Received: (from rafan@localhost) by repoman.freebsd.org (8.14.1/8.14.1/Submit) id m364n6Mn011792; Sun, 6 Apr 2008 04:49:06 GMT (envelope-from rafan) Message-Id: <200804060449.m364n6Mn011792@repoman.freebsd.org> From: Rong-En Fan Date: Sun, 6 Apr 2008 04:49:06 +0000 (UTC) To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org X-FreeBSD-CVS-Branch: HEAD Cc: Subject: cvs commit: ports/biology Makefile ports/biology/mapm3 Makefile distinfo pkg-descr pkg-plist ports/biology/mapm3/files patch-Makefile patch-lib-iolib.c patch-lib-iolib.h patch-lib-makehelp.c patch-lib-shell.c patch-lib-syscode.c ... X-BeenThere: cvs-all@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: CVS commit messages for the entire tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 06 Apr 2008 04:49:06 -0000 rafan 2008-04-06 04:49:06 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/mapm3 Makefile distinfo pkg-descr pkg-plist biology/mapm3/files patch-Makefile patch-lib-iolib.c patch-lib-iolib.h patch-lib-makehelp.c patch-lib-shell.c patch-lib-syscode.c patch-lib-system.h patch-mapm-chroms.c patch-mapm-database.c patch-mapm-info.c patch-mapm-map_info.h patch-mapm-mapm.h patch-mapm-maps.c patch-mapm-npt_cmds.c patch-mapm-print.c patch-mapm-reader.c patch-mapm-state.c patch-mapm-sys_cmds.c patch-mapm-two_cmds.c patch-quant-qcmds.c patch-quant-qraw.c patch-sun-xmapmaker patch-sun-xqtl Log: MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program. MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL). WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ PR: ports/122452 Submitted by: Tassilo Philipp Revision Changes Path 1.95 +1 -0 ports/biology/Makefile 1.1 +26 -0 ports/biology/mapm3/Makefile (new) 1.1 +3 -0 ports/biology/mapm3/distinfo (new) 1.1 +54 -0 ports/biology/mapm3/files/patch-Makefile (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-lib-iolib.c (new) 1.1 +78 -0 ports/biology/mapm3/files/patch-lib-iolib.h (new) 1.1 +81 -0 ports/biology/mapm3/files/patch-lib-makehelp.c (new) 1.1 +81 -0 ports/biology/mapm3/files/patch-lib-shell.c (new) 1.1 +43 -0 ports/biology/mapm3/files/patch-lib-syscode.c (new) 1.1 +71 -0 ports/biology/mapm3/files/patch-lib-system.h (new) 1.1 +29 -0 ports/biology/mapm3/files/patch-mapm-chroms.c (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-database.c (new) 1.1 +41 -0 ports/biology/mapm3/files/patch-mapm-info.c (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-map_info.h (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-mapm.h (new) 1.1 +72 -0 ports/biology/mapm3/files/patch-mapm-maps.c (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-npt_cmds.c (new) 1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-print.c (new) 1.1 +191 -0 ports/biology/mapm3/files/patch-mapm-reader.c (new) 1.1 +18 -0 ports/biology/mapm3/files/patch-mapm-state.c (new) 1.1 +47 -0 ports/biology/mapm3/files/patch-mapm-sys_cmds.c (new) 1.1 +16 -0 ports/biology/mapm3/files/patch-mapm-two_cmds.c (new) 1.1 +93 -0 ports/biology/mapm3/files/patch-quant-qcmds.c (new) 1.1 +53 -0 ports/biology/mapm3/files/patch-quant-qraw.c (new) 1.1 +9 -0 ports/biology/mapm3/files/patch-sun-xmapmaker (new) 1.1 +9 -0 ports/biology/mapm3/files/patch-sun-xqtl (new) 1.1 +13 -0 ports/biology/mapm3/pkg-descr (new) 1.1 +6 -0 ports/biology/mapm3/pkg-plist (new)