Date: Wed, 4 Apr 2018 17:21:39 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r466449 - in head/biology: . pear-merger Message-ID: <201804041721.w34HLdD6045495@repo.freebsd.org>
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Author: jwb Date: Wed Apr 4 17:21:39 2018 New Revision: 466449 URL: https://svnweb.freebsd.org/changeset/ports/466449 Log: biology/pear-merger: Memory-efficient and accurate paired-end read merger Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14959 Added: head/biology/pear-merger/ head/biology/pear-merger/Makefile (contents, props changed) head/biology/pear-merger/distinfo (contents, props changed) head/biology/pear-merger/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Wed Apr 4 16:38:50 2018 (r466448) +++ head/biology/Makefile Wed Apr 4 17:21:39 2018 (r466449) @@ -78,6 +78,7 @@ SUBDIR += p5-TrimGalore SUBDIR += p5-transdecoder SUBDIR += paml + SUBDIR += pear-merger SUBDIR += phrap SUBDIR += phred SUBDIR += phylip Added: head/biology/pear-merger/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/pear-merger/Makefile Wed Apr 4 17:21:39 2018 (r466449) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +# Newer versions require registration to download and the site is unreliable. + +PORTNAME= pear +DISTVERSION= 0.9.6 +CATEGORIES= biology +MASTER_SITES= https://depot.galaxyproject.org/software/pear/ +PKGNAMESUFFIX= -merger +DISTNAME= ${PORTNAME}_${PORTVERSION}_src_all + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Memory-efficient and highly accurate paired-end read merger + +LICENSE= CC-BY-NC-SA-3.0 + +GNU_CONFIGURE= yes + +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}-src + +PLIST_FILES= bin/pearRM man/man1/pearRM.1.gz + +do-install: + @${CP} ${WRKSRC}/man/pear.1 ${WRKSRC}/man/pearRM.1 + ${INSTALL_PROGRAM} ${WRKSRC}/src/pear ${STAGEDIR}${PREFIX}/bin/pearRM + ${INSTALL_MAN} ${WRKSRC}/man/pearRM.1 ${STAGEDIR}${MANPREFIX}/man/man1 + +.include <bsd.port.mk> Added: head/biology/pear-merger/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/pear-merger/distinfo Wed Apr 4 17:21:39 2018 (r466449) @@ -0,0 +1,3 @@ +TIMESTAMP = 1519766031 +SHA256 (pear_0.9.6_src_all.tar.gz) = f7728371e26a5b46fa928b0f7ae1b552ed6a78815b117ba48ef1af98e96c8e2b +SIZE (pear_0.9.6_src_all.tar.gz) = 292790 Added: head/biology/pear-merger/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/pear-merger/pkg-descr Wed Apr 4 17:21:39 2018 (r466449) @@ -0,0 +1,5 @@ +PEAR is an ultrafast, memory-efficient and highly accurate paired-end read +merger. It is fully parallelized and can run with as low as just a few +kilobytes of memory. + +WWW: http://sco.h-its.org/exelixis/web/software/pear/
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