From nobody Fri Dec 31 14:33:01 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 1D482192646A; Fri, 31 Dec 2021 14:33:02 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JQSKn68vcz4lZ2; Fri, 31 Dec 2021 14:33:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B38D75743; Fri, 31 Dec 2021 14:33:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BVEX19H053661; Fri, 31 Dec 2021 14:33:01 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1BVEX1nd053660; Fri, 31 Dec 2021 14:33:01 GMT (envelope-from git) Date: Fri, 31 Dec 2021 14:33:01 GMT Message-Id: <202112311433.1BVEX1nd053660@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 2b4cfc8ff39b - main - biology/minimap2: Update to 2.24 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2b4cfc8ff39b9c6afa6984ca1deb5e0ce612608b Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1640961181; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=MZ4cbxkYNm2zU+kp4jn1/byGJ+5umqG73ALYzUBpazE=; b=BwVC9R12FVxyCs9It0LPx5ToWXNdgHfODgeNHeOjXju/bUB8qi4sig1W/QnXUxQmV/RUCM hSa5wk0NdXn7vpARUvDI0Qj1OAEHyWnYw91zW3PomOsfHqWX2B1QBuTfciBeyKp0feLqsa gu2QQgkEYhj7AO9lAfUBJmhdlmJD4eR/Vo3dysMq6wkRuMYYQO8sdJZzs57f68b8zGKQK7 /Z3eAJOaXa/wTx/jN4esbeGlaFFuGpgaR/uZTPn7oCU6c47B6VZhWwUj5B6gHMvh8tSa62 c/6u8KebZQTDIqNnbldODfigg1l1R+WvAH1cZX+k6NSLUjwnFd5jmILc0GpuZQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1640961181; a=rsa-sha256; cv=none; b=slOjzYBUYZwA4qg1n5lgxPVcWSwObwLeQER43nnTJynNX2e3n+Qav4taL1Y3FeuJ7ZjxaE SBTZ3vBtoD03ISXdrKf7N5dj/qYpOpOLHHrE7S0HeBa3xP13LHJ68im1kqKZvRe/zdUI9g xDZ2ennPumcTts9iDORTix/9rVnYeLJKNbCykgE+R+/ctDKqmFX9P3kJ1pXdCHREMJNbQ3 ZVai5GXQKP//rpqtFaaipzbxFmRWAPsK5km1rf6OzoODnsCDoeFK+XbxJ3DVvZ5bW0e11S raa5kKt4Ild8birbEDwSFUz/5gl6uV4rjj44VFNC00zHujG9zeTXvV/Izhl6uw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2b4cfc8ff39b9c6afa6984ca1deb5e0ce612608b commit 2b4cfc8ff39b9c6afa6984ca1deb5e0ce612608b Author: Jason W. Bacon AuthorDate: 2021-12-31 14:30:52 +0000 Commit: Jason W. Bacon CommitDate: 2021-12-31 14:30:52 +0000 biology/minimap2: Update to 2.24 Fix chaining algorithm issue resulting in poorly aligned regions Reported by: portscout --- biology/minimap2/Makefile | 3 +-- biology/minimap2/distinfo | 6 +++--- 2 files changed, 4 insertions(+), 5 deletions(-) diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 2c04ccd846d9..0c19edf07eb9 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,7 +1,6 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.23 -PORTREVISION= 1 +DISTVERSION= 2.24 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index 8488018ac682..65cf355b10a5 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1638198281 -SHA256 (lh3-minimap2-v2.23_GH0.tar.gz) = 1837465234bfec0fc8acaa3bdd371dfc57cf56137f7e6b8c723dcbed2f03f144 -SIZE (lh3-minimap2-v2.23_GH0.tar.gz) = 252484 +TIMESTAMP = 1640960772 +SHA256 (lh3-minimap2-v2.24_GH0.tar.gz) = 2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc +SIZE (lh3-minimap2-v2.24_GH0.tar.gz) = 253050