From nobody Sun Jul 31 08:12:57 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4LwYsP4lvkz4XXWY; Sun, 31 Jul 2022 08:12:57 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4LwYsP4LTJz47Kc; Sun, 31 Jul 2022 08:12:57 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1659255177; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; 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Sun, 31 Jul 2022 08:12:57 GMT (envelope-from git) Date: Sun, 31 Jul 2022 08:12:57 GMT Message-Id: <202207310812.26V8CvqT085034@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: c7b296877cf8 - main - biology/viennarna: Update 2.5.0 -> 2.5.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: c7b296877cf88cf00873673bcdcb5109ab9f3f93 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=c7b296877cf88cf00873673bcdcb5109ab9f3f93 commit c7b296877cf88cf00873673bcdcb5109ab9f3f93 Author: Yuri Victorovich AuthorDate: 2022-07-31 08:09:21 +0000 Commit: Yuri Victorovich CommitDate: 2022-07-31 08:12:49 +0000 biology/viennarna: Update 2.5.0 -> 2.5.1 Also add test target. --- biology/viennarna/Makefile | 4 +++- biology/viennarna/distinfo | 6 +++--- biology/viennarna/pkg-plist | 4 ++-- 3 files changed, 8 insertions(+), 6 deletions(-) diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile index b3efc36f81f0..31558cd140f9 100644 --- a/biology/viennarna/Makefile +++ b/biology/viennarna/Makefile @@ -1,5 +1,5 @@ PORTNAME= viennarna -DISTVERSION= 2.5.0 +DISTVERSION= 2.5.1 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ DISTNAME= ViennaRNA-${DISTVERSION} @@ -25,6 +25,8 @@ GNU_CONFIGURE= yes CONFIGURE_SHELL= ${PREFIX}/bin/bash CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl +TEST_TARGET= check + CONFLICTS_INSTALL= g2 # include/g2.h INFO= RNAlib diff --git a/biology/viennarna/distinfo b/biology/viennarna/distinfo index a39942444d22..2805208fdbc0 100644 --- a/biology/viennarna/distinfo +++ b/biology/viennarna/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1643064934 -SHA256 (ViennaRNA-2.5.0.tar.gz) = b85544650ee316743173ec9b30497cc4c559f1bfb8f66d16c563f780afd8c0c5 -SIZE (ViennaRNA-2.5.0.tar.gz) = 59332268 +TIMESTAMP = 1659253803 +SHA256 (ViennaRNA-2.5.1.tar.gz) = 05400437cf15595e10b1a25df6c9c48856f356130f9d1e380fa8866b6d27f457 +SIZE (ViennaRNA-2.5.1.tar.gz) = 58088049 diff --git a/biology/viennarna/pkg-plist b/biology/viennarna/pkg-plist index 4bb410abf849..d05270d41c73 100644 --- a/biology/viennarna/pkg-plist +++ b/biology/viennarna/pkg-plist @@ -17,6 +17,7 @@ bin/RNAforester bin/RNAheat bin/RNAinverse bin/RNAlocmin +bin/RNAmultifold bin/RNApaln bin/RNAparconv bin/RNApdist @@ -27,7 +28,6 @@ bin/RNApvmin bin/RNAsnoop bin/RNAsubopt bin/RNAup -bin/RNAmultifold bin/b2ct bin/ct2db bin/kinwalker @@ -138,7 +138,7 @@ include/ViennaRNA/plotting/RNApuzzler/RNApuzzler.h include/ViennaRNA/plotting/RNApuzzler/RNAturtle.h include/ViennaRNA/plotting/alignments.h include/ViennaRNA/plotting/layouts.h -include/ViennaRNA/plotting/naview.h +include/ViennaRNA/plotting/naview/naview.h include/ViennaRNA/plotting/probabilities.h include/ViennaRNA/plotting/structures.h include/ViennaRNA/plotting/utils.h