Date: Wed, 13 Oct 2021 12:56:28 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: d92344039b43 - main - biology/py-py2bit: Python interface for 2bit packed nucleotide files Message-ID: <202110131256.19DCuS1Q050485@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=d92344039b4350674d959be16d5a2cfe07f87172 commit d92344039b4350674d959be16d5a2cfe07f87172 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-10-13 12:53:09 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-10-13 12:53:53 +0000 biology/py-py2bit: Python interface for 2bit packed nucleotide files py2bit is a python extension, written in C, for quick access to 2bit files for randomly accessible, packed nucleotide sequences. The extension uses lib2bit for file access. --- biology/Makefile | 1 + biology/py-py2bit/Makefile | 16 ++++++++++++++++ biology/py-py2bit/distinfo | 3 +++ biology/py-py2bit/pkg-descr | 5 +++++ 4 files changed, 25 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index c779368ef1d2..3f2fb1f06f13 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -159,6 +159,7 @@ SUBDIR += py-orange3-bioinformatics SUBDIR += py-orange3-single-cell SUBDIR += py-pandas-charm + SUBDIR += py-py2bit SUBDIR += py-pyfaidx SUBDIR += py-pysam SUBDIR += py-python-libsbml diff --git a/biology/py-py2bit/Makefile b/biology/py-py2bit/Makefile new file mode 100644 index 000000000000..7295e91ed18f --- /dev/null +++ b/biology/py-py2bit/Makefile @@ -0,0 +1,16 @@ +PORTNAME= py2bit +DISTVERSION= 0.3.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python interface for 2bit packed nucleotide files + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-py2bit/distinfo b/biology/py-py2bit/distinfo new file mode 100644 index 000000000000..a797a50f82d2 --- /dev/null +++ b/biology/py-py2bit/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1617287956 +SHA256 (py2bit-0.3.0.tar.gz) = 450555c40cba66957ac8c9a4b6afb625fb34c4bb41638de78c87661ff8b682ef +SIZE (py2bit-0.3.0.tar.gz) = 16010 diff --git a/biology/py-py2bit/pkg-descr b/biology/py-py2bit/pkg-descr new file mode 100644 index 000000000000..f6a726605c5e --- /dev/null +++ b/biology/py-py2bit/pkg-descr @@ -0,0 +1,5 @@ +py2bit is a python extension, written in C, for quick access to 2bit +files for randomly accessible, packed nucleotide sequences. The +extension uses lib2bit for file access. + +WWW: https://github.com/deeptools/py2bit
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