From owner-freebsd-ports Mon Mar 12 2:10: 7 2001 Delivered-To: freebsd-ports@hub.freebsd.org Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by hub.freebsd.org (Postfix) with ESMTP id 64DD037B719 for ; Mon, 12 Mar 2001 02:10:01 -0800 (PST) (envelope-from gnats@FreeBSD.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.11.1/8.11.1) id f2CAA1386961; Mon, 12 Mar 2001 02:10:01 -0800 (PST) (envelope-from gnats) Received: from fling.sanbi.ac.za (fling.sanbi.ac.za [196.38.142.119]) by hub.freebsd.org (Postfix) with ESMTP id C867537B719 for ; Mon, 12 Mar 2001 02:05:44 -0800 (PST) (envelope-from johann@sanbi.ac.za) Received: from johann by fling.sanbi.ac.za with local (Exim 3.13 #4) id 14cPCw-000ICS-00 for FreeBSD-gnats-submit@freebsd.org; Mon, 12 Mar 2001 12:05:42 +0200 Message-Id: Date: Mon, 12 Mar 2001 12:05:42 +0200 From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.2 Subject: ports/25728: Port update: biology/emboss (MAINTAINER) Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk X-Loop: FreeBSD.org >Number: 25728 >Category: ports >Synopsis: Port update: biology/emboss (MAINTAINER) >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Mon Mar 12 02:10:00 PST 2001 >Closed-Date: >Last-Modified: >Originator: Johann Visagie >Release: FreeBSD 5.0-CURRENT i386 >Organization: Electric Genetics >Environment: >Description: - Update the EMBOSS suite (biology/emboss) to v1.11.0 - Two new tools in this release, otherwise nothing earth-shattering. - Removed a redundant library dependency. >How-To-Repeat: >Fix: diff -ruN emboss.bak/Makefile emboss/Makefile --- emboss.bak/Makefile Mon Mar 12 12:02:08 2001 +++ emboss/Makefile Mon Mar 12 12:01:26 2001 @@ -6,7 +6,7 @@ # PORTNAME= emboss -PORTVERSION= 1.10.1 +PORTVERSION= 1.11.0 CATEGORIES= biology MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ ftp://ftp.no.embnet.org/pub/EMBOSS/ \ @@ -18,8 +18,7 @@ MAINTAINER= johann@egenetics.com -LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd \ - png.4:${PORTSDIR}/graphics/png +LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd USE_GMAKE= yes USE_LIBTOOL= yes diff -ruN emboss.bak/distinfo emboss/distinfo --- emboss.bak/distinfo Mon Mar 12 12:02:08 2001 +++ emboss/distinfo Mon Mar 12 10:49:46 2001 @@ -1,5 +1,5 @@ -MD5 (emboss/EMBOSS-1.10.1.tar.gz) = de75c2e3c93ce2e52926edb67bdbdced +MD5 (emboss/EMBOSS-1.11.0.tar.gz) = b7376e98ea7d86eb4b5411013bd98dd3 MD5 (emboss/EMNU-1.0.4.tar.gz) = 6ebdf128e1b531911ff97d2b8d6a59d8 -MD5 (emboss/MSE-0.0.4.tar.gz) = 2d7f281a6d3d4c08500d8567ec9e3f2c -MD5 (emboss/PHYLIP-3.573c.tar.gz) = c257a564bbd9bf48433978bc5206a91d -MD5 (emboss/TOPO-0.1.tar.gz) = 07b94f0462e51e811c30f13ad0a54247 +MD5 (emboss/MSE-0.0.4.tar.gz) = 96f87f4f321e6c6d65793391971504a1 +MD5 (emboss/PHYLIP-3.573c.tar.gz) = d6062201d6492676c82f2b7b8e9d8c95 +MD5 (emboss/TOPO-0.1.tar.gz) = ab3ff940e689d044476528b47e983184 diff -ruN emboss.bak/pkg-plist emboss/pkg-plist --- emboss.bak/pkg-plist Mon Mar 12 12:02:08 2001 +++ emboss/pkg-plist Mon Mar 12 11:23:16 2001 @@ -63,6 +63,7 @@ bin/banana bin/btwisted bin/chaos +bin/charge bin/checktrans bin/chips bin/cirdna @@ -79,6 +80,7 @@ bin/dbifasta bin/dbiflat bin/dbigcg +bin/degapseq bin/descseq bin/diffseq bin/digest @@ -214,6 +216,7 @@ share/EMBOSS/acd/banana.acd share/EMBOSS/acd/btwisted.acd share/EMBOSS/acd/chaos.acd +share/EMBOSS/acd/charge.acd share/EMBOSS/acd/checktrans.acd share/EMBOSS/acd/chips.acd share/EMBOSS/acd/cirdna.acd @@ -781,6 +784,7 @@ share/doc/EMBOSS/programs/html/dbifasta.html share/doc/EMBOSS/programs/html/dbiflat.html share/doc/EMBOSS/programs/html/dbigcg.html +share/doc/EMBOSS/programs/html/degapseq.html share/doc/EMBOSS/programs/html/descseq.html share/doc/EMBOSS/programs/html/diffseq.html share/doc/EMBOSS/programs/html/digest.html @@ -1010,6 +1014,7 @@ share/doc/EMBOSS/programs/text/clique.txt share/doc/EMBOSS/programs/text/codcmp.txt share/doc/EMBOSS/programs/text/coderet.txt +share/doc/EMBOSS/programs/text/complex.txt share/doc/EMBOSS/programs/text/compseq.txt share/doc/EMBOSS/programs/text/cons.txt share/doc/EMBOSS/programs/text/consense.txt @@ -1024,6 +1029,7 @@ share/doc/EMBOSS/programs/text/dbifasta.txt share/doc/EMBOSS/programs/text/dbiflat.txt share/doc/EMBOSS/programs/text/dbigcg.txt +share/doc/EMBOSS/programs/text/degapseq.txt share/doc/EMBOSS/programs/text/descseq.txt share/doc/EMBOSS/programs/text/diffseq.txt share/doc/EMBOSS/programs/text/digest.txt >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message