Date: Sat, 31 Jan 2015 07:06:59 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 84amd64-default][biology/migrate] Failed for migrate-3.6.5 in build Message-ID: <201501310706.t0V76xiA019824@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: wen@FreeBSD.org Ident: $FreeBSD: head/biology/migrate/Makefile 374114 2014-12-06 14:54:48Z wen $ Log URL: http://beefy2.isc.freebsd.org/data/84amd64-default/2015-01-30_21h51m44s/logs/migrate-3.6.5.log Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=84amd64-default&build=2015-01-30_21h51m44s Log: ====>> Building biology/migrate build started at Sat Jan 31 07:06:40 UTC 2015 port directory: /usr/ports/biology/migrate building for: FreeBSD 84amd64-default-job-15 8.4-RELEASE-p16 FreeBSD 8.4-RELEASE-p16 amd64 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/migrate/Makefile 374114 2014-12-06 14:54:48Z wen $ Poudriere version: 3.1.1 Host OSVERSION: 1100056 Jail OSVERSION: 804000 ---Begin Environment--- OSVERSION=804000 UNAME_v=FreeBSD 8.4-RELEASE-p16 UNAME_r=8.4-RELEASE-p16 FTP_PASSIVE_MODE=YES BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/84amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=migrate-3.6.5 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/84amd64-default/ref/.p/pool MASTERNAME=84amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1.1 LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for migrate-3.6.5: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_prog_GMAKE="make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTNAME=migrate OSREL=8.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/migrate" EXAMPLESDIR="share/examples/migrate" DATADIR="share/migrate" WWWDIR="www/migrate" ETCDIR="etc/migrate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/migrate DOCSDIR=/usr/local/share/doc/migrate EXAMPLESDIR=/usr/local/share/examples/migrate WWWDIR=/usr/local/www/migrate ETCDIR=/usr/local/etc/migrate --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted ran via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> migrate-3.6.5 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.4.7.txz [84amd64-default-job-15] Installing pkg-1.4.7... [84amd64-default-job-15] Extracting pkg-1.4.7... done Message for pkg-1.4.7: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of migrate-3.6.5 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by migrate-3.6.5 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by migrate-3.6.5 for building => SHA256 Checksum OK for migrate-3.6.5.src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by migrate-3.6.5 for building ===> Extracting for migrate-3.6.5 => SHA256 Checksum OK for migrate-3.6.5.src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for migrate-3.6.5 ===> Applying FreeBSD patches for migrate-3.6.5 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for migrate-3.6.5 configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd8.4 checking host system type... amd64-portbld-freebsd8.4 checking target system type... amd64-portbld-freebsd8.4 USERFLAGS+=-O2: not found checking for gmake... (cached) make ======================================================================= Migrate subversion: Hardware: portbld System OS: freebsd8.4 FreeBSD System CPU: amd64 ----------------------------------------------------------------------- checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes CFLAGS+=: not found C-compiler: cc C++-compiler:c++ CFLAGS: -O2 -pipe -fstack-protector -fno-strict-aliasing ======================================================================= checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking for pthread_create in -pthread... yes checking for MPI_Init in -lmpi... no checking for exp in -lm... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for strings.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for int... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for inline... inline checking return type of signal handlers... void checking for strftime... (cached) yes checking for strcspn... (cached) yes checking for strsep... (cached) yes checking for lgamma... yes checking which zlib implementation to use... autodetect checking for main in -lz... yes checking for gzbuffer... no configure: creating ./config.status config.status: creating Makefile config.status: creating conf.h config.status: conf.h is unchanged MIGRATE-N is now setup to compile the program you need to type one of the commands below (ordered by preference): SINGLE CPU machines make # with PDF output support # this might fail on first attempt, # if the make fails, please let me know # often linking fails because the C++ pdf library # and the core migrate parts (C) mismatch # check the Makefile line for STDLIB= -lstdc++ SMP machines more than 1 CPU in machine make thread # uses the thread library if present make # on macs running macos 10.6+ using GrandCentral PARALLEL Computers, Clusters with MPI software make mpis # each cpu-core can be treated as a node make mpis-thread # experimental, may increase load per node! ------------------------------------------------------------------------ SPEED and other TESTING the migrate website contains a testsuite.tar.gz that has many tests for single, parallel and thread compilations the tests are driven by a python script rt (see the README in the testsuite) and a submit script that allows to streamline submissions to a batch queue system, currently supported systems are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE ------------------------------------------------------------------------ In case there are problems with the compile send a message to the migrate-support@google.com usergroup, include a log of ./configure make ======================================================================= =========================================================================== =======================<phase: build >============================ ===> Building for migrate-3.6.5 (cd ./haru ; make -f makefile.gcc "CC=c++" "CPP=cc" "ARCH=amd64" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ") cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfExceptions.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfList.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUtils.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfStreams.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAutoPtrObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfContents.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPages.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXref.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDestinations.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfOutlines.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfBorderStyle.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAnnotations.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDoc.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCatalog.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfInfo.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Courier.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Helvetica.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Times.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Symbol.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_ZapfDingbats.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_ISO8859.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_KOI8.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_MSCP.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUnicodeText.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Gothic.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Mincyo.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimHei.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimSun.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Ming.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Batang.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Dotum.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_RKSJ.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_GB_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_ETen_B5.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSCms_UHC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSC_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPngImage.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfJpegImage.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncrypt.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_jpfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_krfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cnsfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cntfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_png.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_jpeg.cc cc: -lstdc++: linker input file unused because linking not done ar rc libharu.a PdfExceptions.o PdfList.o PdfUtils.o PdfStreams.o PdfAutoPtrObjects.o PdfObjects.o PdfContents.o PdfPages.o PdfFonts.o PdfXref.o PdfDestinations.o PdfOutlines.o PdfBorderStyle.o PdfAnnotations.o PdfDoc.o PdfCatalog.o PdfInfo.o PdfEncoding.o PdfFontDef.o PdfXObjects.o PdfFontDef_Courier.o PdfFontDef_Helvetica.o PdfFontDef_Times.o PdfFontDef_Symbol.o PdfFontDef_ZapfDingbats.o PdfEncoding_ISO8859.o PdfEncoding_KOI8.o PdfEncoding_MSCP.o PdfMbFonts.o PdfCMap.o PdfUnicodeText.o PdfMbFontDef_Gothic.o PdfMbFontDef_Mincyo.o PdfMbFontDef_SimHei.o PdfMbFontDef_SimSun.o PdfMbFontDef_Ming.o PdfMbFontDef_Batang.o PdfMbFontDef_Dotum.o PdfCMap_RKSJ.o PdfCMap_EUC.o PdfCMap_GB_EUC.o PdfCMap_ETen_B5.o PdfCMap_KSCms_UHC.o PdfCMap_KSC_EUC.o PdfPngImage.o PdfJpegImage.o PdfEncrypt.o libharuc.o libharuc_jpfonts.o libharuc_krfonts.o libharuc_cnsfonts.o libharuc_cntfonts.o libharu_png.o libharu_jpeg.o ranlib libharu.a Using system zlib architecture /usr/bin/make migrate-n "CFLAGS = -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION=\"\\\"\\\"\" -DMIGRATEVERSION=\"\\\"3.6.5\\\"\" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++" "LIBS = -Lharu -lharu -lz -lm" "LDFLAGS = " cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c aic.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c altivec.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c autotune.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c bayes.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c broyden.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c calculator.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c combroyden2.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fstack-protector -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\"" -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c data.c data.c:57:21: error: xlocale.h: No such file or directory *** Error code 1 Stop in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.5/src. *** Error code 1 Stop in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.5/src. *** Error code 1 Stop in /usr/ports/biology/migrate.
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