Date: Wed, 13 Oct 2021 13:06:37 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 904a889fd144 - main - biology/py-pybigwig: Python access to bigWig files using libBigWig Message-ID: <202110131306.19DD6bl4064437@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=904a889fd144ce50db4d97a702861aea89fe2e94 commit 904a889fd144ce50db4d97a702861aea89fe2e94 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-10-13 13:03:21 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-10-13 13:03:21 +0000 biology/py-pybigwig: Python access to bigWig files using libBigWig py-bigwig is a python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. This extension uses libBigWig for local and remote file access. --- biology/Makefile | 1 + biology/py-pybigwig/Makefile | 21 +++++++++++++++++++++ biology/py-pybigwig/distinfo | 3 +++ biology/py-pybigwig/pkg-descr | 5 +++++ 4 files changed, 30 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 3f2fb1f06f13..35521b0b5f27 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -160,6 +160,7 @@ SUBDIR += py-orange3-single-cell SUBDIR += py-pandas-charm SUBDIR += py-py2bit + SUBDIR += py-pybigwig SUBDIR += py-pyfaidx SUBDIR += py-pysam SUBDIR += py-python-libsbml diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile new file mode 100644 index 000000000000..ab33b4650777 --- /dev/null +++ b/biology/py-pybigwig/Makefile @@ -0,0 +1,21 @@ +PORTNAME= pyBigWig +DISTVERSION= 0.3.18 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python access to bigWig files using libBigWig + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +LIB_DEPENDS= libcurl.so:ftp/curl + +USES= localbase python +USE_PYTHON= autoplist distutils + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.so + +.include <bsd.port.mk> diff --git a/biology/py-pybigwig/distinfo b/biology/py-pybigwig/distinfo new file mode 100644 index 000000000000..35e26a9f88d0 --- /dev/null +++ b/biology/py-pybigwig/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1617288519 +SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc +SIZE (pyBigWig-0.3.18.tar.gz) = 64834 diff --git a/biology/py-pybigwig/pkg-descr b/biology/py-pybigwig/pkg-descr new file mode 100644 index 000000000000..111f72f80af6 --- /dev/null +++ b/biology/py-pybigwig/pkg-descr @@ -0,0 +1,5 @@ +py-bigwig is a python extension, written in C, for quick access to +bigBed files and access to and creation of bigWig files. This extension +uses libBigWig for local and remote file access. + +WWW: https://github.com/deeptools/pyBigWig
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