Date: Mon, 20 May 2019 06:27:12 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/abinit] Failed for abinit-8.10.3_3 in configure Message-ID: <201905200627.x4K6RCJN094293@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/science/abinit/Makefile 501030 2019-05-08 16:05:53Z jbeich $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p501892_s347948/logs/abinit-8.10.3_3.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p501892_s347948 Log: =>> Building science/abinit build started at Mon May 20 06:26:53 UTC 2019 port directory: /usr/ports/science/abinit package name: abinit-8.10.3_3 building for: FreeBSD head-amd64-default-job-19 13.0-CURRENT FreeBSD 13.0-CURRENT 1300028 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/abinit/Makefile 501030 2019-05-08 16:05:53Z jbeich $ Poudriere version: 3.2.8-4-g701d8fe1 Host OSVERSION: 1300018 Jail OSVERSION: 1300028 Job Id: 19 !!! Jail is newer than host. (Jail: 1300028, Host: 1300018) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300028 UNAME_v=FreeBSD 13.0-CURRENT 1300028 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-4-g701d8fe1 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for abinit-8.10.3_3: MPI=on: MPI (Message Passing Interface) support OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared --disable-static --enable-mpi --enable-openmp --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- CC_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " CXX_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " FC_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " F77="gfortran8" FC="gfortran8" FFLAGS="-O -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-ffree-line-length-none -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/abinit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/scien ce/abinit/work HOME=/wrkdirs/usr/ports/science/abinit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/abinit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-ffree-line-length-none -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/abinit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/abinit/work HOME=/wrkdirs/usr/ports/science/abinit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/abinit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fst ack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/abinit" EXAMPLESDIR="share/examples/abinit" DATADIR="share/abinit" WWWDIR="www/abinit" ETCDIR="etc/abinit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/abinit DOCSDIR=/usr/local/share/doc/abinit EXAMPLESDIR=/usr/local/share/examples/abinit WWWDIR=/usr/local/www/abinit ETCDIR=/usr/local/etc/abinit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300028 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> abinit-8.10.3_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-amd64-default-job-19] Installing pkg-1.10.5_5... [head-amd64-default-job-19] Extracting pkg-1.10.5_5: .......... done ===> abinit-8.10.3_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of abinit-8.10.3_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by abinit-8.10.3_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by abinit-8.10.3_3 for building => SHA256 Checksum OK for abinit-8.10.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by abinit-8.10.3_3 for building ===> Extracting for abinit-8.10.3_3 => SHA256 Checksum OK for abinit-8.10.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for abinit-8.10.3_3 ===> Applying FreeBSD patches for abinit-8.10.3_3 =========================================================================== =======================<phase: build-depends >============================ ===> abinit-8.10.3_3 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz [head-amd64-default-job-19] Installing gcc8-8.3.0_2... [head-amd64-default-job-19] `-- Installing binutils-2.32,1... [head-amd64-default-job-19] | `-- Installing gettext-runtime-0.19.8.1_2... [head-amd64-default-job-19] | | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-19] | | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-19] | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [head-amd64-default-job-19] `-- Extracting binutils-2.32,1: .......... done [head-amd64-default-job-19] `-- Installing gmp-6.1.2_1... [head-amd64-default-job-19] `-- Extracting gmp-6.1.2_1: .......... done [head-amd64-default-job-19] `-- Installing mpc-1.1.0_2... [head-amd64-default-job-19] | `-- Installing mpfr-4.0.2... [head-amd64-default-job-19] | `-- Extracting mpfr-4.0.2: .......... done [head-amd64-default-job-19] `-- Extracting mpc-1.1.0_2: ......... done [head-amd64-default-job-19] Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> abinit-8.10.3_3 depends on executable: gfortran8 - found ===> Returning to build of abinit-8.10.3_3 ===> abinit-8.10.3_3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-amd64-default-job-19] Installing gmake-4.2.1_3... [head-amd64-default-job-19] Extracting gmake-4.2.1_3: .......... done ===> abinit-8.10.3_3 depends on executable: gmake - found ===> Returning to build of abinit-8.10.3_3 ===> abinit-8.10.3_3 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> abinit-8.10.3_3 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_7.txz [head-amd64-default-job-19] Installing lapack-3.5.0_7... [head-amd64-default-job-19] `-- Installing blas-3.5.0_5... [head-amd64-default-job-19] `-- Extracting blas-3.5.0_5: ....... done [head-amd64-default-job-19] Extracting lapack-3.5.0_7: .......... done ===> abinit-8.10.3_3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of abinit-8.10.3_3 ===> abinit-8.10.3_3 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> abinit-8.10.3_3 depends on shared library: libmpi.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_4.txz [head-amd64-default-job-19] Installing mpich-3.2.1_4... [head-amd64-default-job-19] `-- Installing hwloc-1.11.11... [head-amd64-default-job-19] | `-- Installing libpciaccess-0.13.5... [head-amd64-default-job-19] | | `-- Installing pciids-20190418... [head-amd64-default-job-19] | | `-- Extracting pciids-20190418: ..... done [head-amd64-default-job-19] | `-- Extracting libpciaccess-0.13.5: ......... done [head-amd64-default-job-19] | `-- Installing libxml2-2.9.8... [head-amd64-default-job-19] | `-- Extracting libxml2-2.9.8: .......... done [head-amd64-default-job-19] `-- Extracting hwloc-1.11.11: .......... done [head-amd64-default-job-19] Extracting mpich-3.2.1_4: .......... done Message from mpich-3.2.1_4: ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> abinit-8.10.3_3 depends on shared library: libmpi.so - found (/usr/local/lib/libmpi.so) ===> Returning to build of abinit-8.10.3_3 ===> abinit-8.10.3_3 depends on shared library: libomp.so - found (/usr/lib/libomp.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for abinit-8.10.3_3 configure: loading site script /usr/ports/Templates/config.site ============================================================================== === Overall startup === ============================================================================== checking build system type... amd64-portbld-freebsd13.0 checking host system type... amd64-portbld-freebsd13.0 checking target system type... amd64-portbld-freebsd13.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... (cached) /usr/bin/tar checking whether gmake sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for gawk... (cached) /usr/bin/awk checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for realpath,readlink... no configure: not loading options (no config file available) ============================================================================== === Build-system information === ============================================================================== configure: ABINIT version 8.10.3 configure: M4 010416 - Autoconf 026900 - Automake 011304 - Libtool 020402 configure: reporting user interface changes: configure: * new option --enable-triqs-v1-4 is available configure: * new option --enable-triqs-v2-0 is available configure: * new option --enable-xml is available ============================================================================== === Option consistency checking === ============================================================================== configure: checking consistency of library-related options configure: |---> all OK configure: configure: checking consistency of experimental options configure: |---> all OK configure: configure: checking consistency of maintainer options configure: |---> all OK configure: configure: parsing command-line options ============================================================================== === Multicore architecture startup === ============================================================================== configure: Initializing MPI support configure: compiler checks deferred configure: GPU support disabled from command-line ============================================================================== === Utilities === ============================================================================== checking for sh... /bin/sh checking for mv... /bin/mv checking for perl... /bin/false checking for rm... /bin/rm checking for patch... patch checking for tar... tar ============================================================================== === C support === ============================================================================== checking for cc... /usr/bin/cc checking for gcc... cc checking whether the C compiler works... no configure: error: in `/wrkdirs/usr/ports/science/abinit/work/abinit-8.10.3': configure: error: C compiler cannot create executables See `config.log' for more details ===> Script "configure" failed unexpectedly. Please report the problem to yuri@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/science/abinit/work/abinit-8.10.3/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/science/abinit
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