Date: Tue, 26 Oct 2021 05:31:11 GMT From: pkg-fallout@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - main-amd64-default][math/py-fastcluster] Failed for py38-fastcluster-1.2.4 in build Message-ID: <202110260531.19Q5VBnQ010765@beefy18.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sunpoet@FreeBSD.org Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/pebf5105f9a4d_s179219ea04/logs/py38-fastcluster-1.2.4.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=pebf5105f9a4d_s179219ea04 Log: =>> Building math/py-fastcluster build started at Tue Oct 26 05:30:55 UTC 2021 port directory: /usr/ports/math/py-fastcluster package name: py38-fastcluster-1.2.4 building for: FreeBSD main-amd64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400039 amd64 maintained by: sunpoet@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1400039 Job Id: 13 !!! Jail is newer than host. (Jail: 1400039, Host: 1400008) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400039 UNAME_v=FreeBSD 14.0-CURRENT 1400039 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py38 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py38 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38/.cache HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-fastcluster/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38/.cache HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-fastcluster/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MA N="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py38-fastcluster" EXAMPLESDIR="share/examples/py38-fastcluster" DATADIR="share/py38-fastcluster" WWWDIR="www/py38-fastcluster" ETCDIR="etc/py38-fastcluster" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py38-fastcluster DOCSDIR=/usr/local/share/doc/py38-fastcluster EXAMPLESDIR=/usr/local/share/examples/py38-fastcluster WWWDIR=/usr/local/www/py38-fastcluster ETCDIR=/usr/local/etc/py38-fastcluster --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400039 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD2CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py38-fastcluster-1.2.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.3.pkg [main-amd64-default-job-13] Installing pkg-1.17.3... [main-amd64-default-job-13] Extracting pkg-1.17.3: .......... done ===> py38-fastcluster-1.2.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py38-fastcluster-1.2.4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py38-fastcluster-1.2.4 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py38-fastcluster-1.2.4 for building => SHA256 Checksum OK for fastcluster-1.2.4.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py38-fastcluster-1.2.4 for building ===> Extracting for py38-fastcluster-1.2.4 => SHA256 Checksum OK for fastcluster-1.2.4.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py38-fastcluster-1.2.4 =========================================================================== =======================<phase: build-depends >============================ ===> py38-fastcluster-1.2.4 depends on package: py38-numpy>=0,1 - not found ===> Installing existing package /packages/All/py38-numpy-1.16.6_2,1.pkg [main-amd64-default-job-13] Installing py38-numpy-1.16.6_2,1... [main-amd64-default-job-13] `-- Installing gcc10-10.3.0... [main-amd64-default-job-13] | `-- Installing binutils-2.37_1,1... [main-amd64-default-job-13] | | `-- Installing gettext-runtime-0.21... [main-amd64-default-job-13] | | `-- Installing indexinfo-0.3.1... [main-amd64-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [main-amd64-default-job-13] | | `-- Extracting gettext-runtime-0.21: .......... done [main-amd64-default-job-13] | `-- Extracting binutils-2.37_1,1: .......... done [main-amd64-default-job-13] | `-- Installing gmp-6.2.1... [main-amd64-default-job-13] | `-- Extracting gmp-6.2.1: .......... done [main-amd64-default-job-13] | `-- Installing mpc-1.2.1... [main-amd64-default-job-13] | | `-- Installing mpfr-4.1.0_1... [main-amd64-default-job-13] | | `-- Extracting mpfr-4.1.0_1: .......... done [main-amd64-default-job-13] | `-- Extracting mpc-1.2.1: ......... done [main-amd64-default-job-13] `-- Extracting gcc10-10.3.0: .......... done [main-amd64-default-job-13] `-- Installing openblas-0.3.18,1... [main-amd64-default-job-13] `-- Extracting openblas-0.3.18,1: .......... done [main-amd64-default-job-13] `-- Installing py38-setuptools-57.0.0... [main-amd64-default-job-13] | `-- Installing python38-3.8.12_1... [main-amd64-default-job-13] | | `-- Installing libffi-3.3_1... [main-amd64-default-job-13] | | `-- Extracting libffi-3.3_1: .......... done [main-amd64-default-job-13] | | `-- Installing mpdecimal-2.5.1... [main-amd64-default-job-13] | | `-- Extracting mpdecimal-2.5.1: .......... done [main-amd64-default-job-13] | | `-- Installing readline-8.1.1... [main-amd64-default-job-13] | | `-- Extracting readline-8.1.1: .......... done [main-amd64-default-job-13] | `-- Extracting python38-3.8.12_1: .......... done [main-amd64-default-job-13] `-- Extracting py38-setuptools-57.0.0: .......... done [main-amd64-default-job-13] `-- Installing suitesparse-umfpack-5.7.9... [main-amd64-default-job-13] | `-- Installing metis-5.1.0_9... [main-amd64-default-job-13] | `-- Extracting metis-5.1.0_9: .......... done [main-amd64-default-job-13] | `-- Installing suitesparse-amd-2.4.6... [main-amd64-default-job-13] | | `-- Installing suitesparse-config-5.10.1... [main-amd64-default-job-13] | | `-- Extracting suitesparse-config-5.10.1: ......... done [main-amd64-default-job-13] | `-- Extracting suitesparse-amd-2.4.6: .......... done [main-amd64-default-job-13] | `-- Installing suitesparse-camd-2.4.6... [main-amd64-default-job-13] | `-- Extracting suitesparse-camd-2.4.6: ......... done [main-amd64-default-job-13] | `-- Installing suitesparse-ccolamd-2.9.6... [main-amd64-default-job-13] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done [main-amd64-default-job-13] | `-- Installing suitesparse-cholmod-3.0.14... [main-amd64-default-job-13] | | `-- Installing suitesparse-colamd-2.9.6... [main-amd64-default-job-13] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done [main-amd64-default-job-13] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done [main-amd64-default-job-13] `-- Extracting suitesparse-umfpack-5.7.9: .......... done [main-amd64-default-job-13] Extracting py38-numpy-1.16.6_2,1: .......... done ===== Message from gcc10-10.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python38-3.8.12_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py38-gdbm databases/py-gdbm@py38 py38-sqlite3 databases/py-sqlite3@py38 py38-tkinter x11-toolkits/py-tkinter@py38 ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py38-fastcluster-1.2.4 depends on package: py38-numpy>=0,1 - found ===> Returning to build of py38-fastcluster-1.2.4 ===> py38-fastcluster-1.2.4 depends on package: py38-setuptools>0 - found ===> py38-fastcluster-1.2.4 depends on file: /usr/local/bin/python3.8 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py38-fastcluster-1.2.4 Fastcluster version: 1.2.4 Python version: 3.8.12 (default, Oct 23 2021, 01:34:05) [Clang 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a running config =========================================================================== =======================<phase: build >============================ ===> Building for py38-fastcluster-1.2.4 Fastcluster version: 1.2.4 Python version: 3.8.12 (default, Oct 23 2021, 01:34:05) [Clang 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a running build running build_py creating build creating build/lib.freebsd-14.0-CURRENT-amd64-3.8 copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-3.8 running build_ext building '_fastcluster' extension creating build/temp.freebsd-14.0-CURRENT-amd64-3.8 creating build/temp.freebsd-14.0-CURRENT-amd64-3.8/src cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o In file included from src/fastcluster_python.cpp:62: src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages] #pragma message("Use fenv header.") ^ Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 173. PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. Stack dump: 0. Program arguments: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o 1. <eof> parser at end of file 2. Per-file LLVM IR generation 3. /usr/include/c++/v1/string:1584:10: Generating code for declaration 'std::basic_string<char>::__init' #0 0x0000000004728821 (/usr/bin/cc+0x4728821) #1 0x00000000047269f5 (/usr/bin/cc+0x47269f5) #2 0x00000000046c05ae (/usr/bin/cc+0x46c05ae) #3 0x00000000046c0733 (/usr/bin/cc+0x46c0733) #4 0x0000000805d0bf30 (/lib/libthr.so.3+0x19f30) cc: error: clang frontend command failed with exit code 134 (use -v to see invocation) FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin cc: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: cc: note: diagnostic msg: /tmp/fastcluster_python-723f0e.cpp cc: note: diagnostic msg: /tmp/fastcluster_python-723f0e.sh cc: note: diagnostic msg: ******************** error: command 'cc' failed with exit status 134 *** Error code 1 Stop. make: stopped in /usr/ports/math/py-fastcluster
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202110260531.19Q5VBnQ010765>