From owner-svn-ports-head@freebsd.org Fri Aug 26 06:00:48 2016 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 99902BC6631; Fri, 26 Aug 2016 06:00:48 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 69DAA1218; Fri, 26 Aug 2016 06:00:48 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id u7Q60lBZ054159; Fri, 26 Aug 2016 06:00:47 GMT (envelope-from pi@FreeBSD.org) Received: (from pi@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id u7Q60l3Y054157; Fri, 26 Aug 2016 06:00:47 GMT (envelope-from pi@FreeBSD.org) Message-Id: <201608260600.u7Q60l3Y054157@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: pi set sender to pi@FreeBSD.org using -f From: Kurt Jaeger Date: Fri, 26 Aug 2016 06:00:47 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r420890 - head/biology/molden X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.22 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 26 Aug 2016 06:00:48 -0000 Author: pi Date: Fri Aug 26 06:00:47 2016 New Revision: 420890 URL: https://svnweb.freebsd.org/changeset/ports/420890 Log: biology/molden: 5.4 -> 5.7 - Adds editable text fields that are longer than the visible string and introduces a new way of selecting a range of amino acids. - introduces interfaces to the open source packages openbabel and pharmer. Openbabel is used to create 2D images of the molecules in a .sdf file. It is also used to do 2D fingerprint searching. Pharmer is used to pharmacophore (3D) searching against indexed databases of .sdf files. Modified: head/biology/molden/Makefile head/biology/molden/distinfo Modified: head/biology/molden/Makefile ============================================================================== --- head/biology/molden/Makefile Fri Aug 26 05:52:48 2016 (r420889) +++ head/biology/molden/Makefile Fri Aug 26 06:00:47 2016 (r420890) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= molden -PORTVERSION= 5.4 -PORTREVISION= 1 +PORTVERSION= 5.7 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/ @@ -16,8 +15,6 @@ RESTRICTED= free for academic, non profi WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION} -BROKEN= does not fetch - USES= fortran gmake USE_XORG= x11 USE_GL= glu Modified: head/biology/molden/distinfo ============================================================================== --- head/biology/molden/distinfo Fri Aug 26 05:52:48 2016 (r420889) +++ head/biology/molden/distinfo Fri Aug 26 06:00:47 2016 (r420890) @@ -1,2 +1,3 @@ -SHA256 (molden5.4.tar.gz) = dbcbb1612673a41bf88acf51bf258493d595c85c11e386485f66da26cd01c25b -SIZE (molden5.4.tar.gz) = 4921271 +TIMESTAMP = 1472043944 +SHA256 (molden5.7.tar.gz) = 72c3568013a9804d8b50b6a88da4571f9d5c685ab25a740702aa119562bcf21c +SIZE (molden5.7.tar.gz) = 4958169