From owner-freebsd-ports Thu Mar 21 9:40:34 2002 Delivered-To: freebsd-ports@hub.freebsd.org Received: from freefall.freebsd.org (freefall.FreeBSD.org [216.136.204.21]) by hub.freebsd.org (Postfix) with ESMTP id D283337B419 for ; Thu, 21 Mar 2002 09:40:01 -0800 (PST) Received: (from gnats@localhost) by freefall.freebsd.org (8.11.6/8.11.6) id g2LHe1p88956; Thu, 21 Mar 2002 09:40:01 -0800 (PST) (envelope-from gnats) Received: from quark.eece.unm.edu (quark.eece.unm.edu [129.24.24.6]) by hub.freebsd.org (Postfix) with ESMTP id EB72037B404 for ; Thu, 21 Mar 2002 09:34:59 -0800 (PST) Received: from pequin.eece.unm.edu ([129.24.24.132] helo=mail.eece.unm.edu) by quark.eece.unm.edu with esmtp (Exim 3.35 #1) id 16o6Sk-000763-00; Thu, 21 Mar 2002 10:34:54 -0700 Received: (from dbader@localhost) by mail.eece.unm.edu (8.11.6+Sun/8.11.6) id g2LHYrc21337; Thu, 21 Mar 2002 10:34:53 -0700 (MST) Message-Id: <200203211734.g2LHYrc21337@mail.eece.unm.edu> Date: Thu, 21 Mar 2002 10:34:53 -0700 (MST) From: "David A. Bader" Reply-To: "David A. Bader" To: FreeBSD-gnats-submit@FreeBSD.org Cc: fernan@iib.unsam.edu.ar X-Send-Pr-Version: 3.113 Subject: ports/36169: ports biology/clustalw patch fix Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk List-ID: List-Archive: (Web Archive) List-Help: (List Instructions) List-Subscribe: List-Unsubscribe: X-Loop: FreeBSD.org >Number: 36169 >Category: ports >Synopsis: fix for port biology/clustalw patch files >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Thu Mar 21 09:40:01 PST 2002 >Closed-Date: >Last-Modified: >Originator: David A. Bader >Release: FreeBSD 4.5-RELEASE i386 >Organization: University of New Mexico >Environment: System: FreeBSD ipdps.eece.unm.edu 4.5-RELEASE FreeBSD 4.5-RELEASE #2: Wed Jan 30 15:25:20 MST 2002 root@ipdps.eece.unm.edu:/usr/obj/usr/src/sys/GENERIC i386 >Description: The previous patches in ports/biology/clustalw/files had modifications to change gets() calls to fgets() calls. These patches had mistakes. >How-To-Repeat: >Fix: the patch files "patch-aa" and "patch-ab" remain the same. the patch file "patch-ac" has been modified the patch file "patch-ad" should be removed please add the patch files patch-ae, patch-af, patch-ag, patch-ah, patch-ai, patch-aj. I've included a uuencoded, gzipped, tarfile of what the FINAL contents of ports/biology/clustalw/files should look like: begin 644 clustalw-files.tar.gz M'XL("#(8FCP``V-L=7-T86QW+69I;&5S+G1A<@#M'&MWVL8R7_&OF-*X"`.V M'DA@7+=Q8IRXQW%\;.=>]R0Y'!D64",DJD=M-\?__>[LKEX@'DZ*?7O")F%! M._N8V9G9>:S2MVSB[SQ;:8&ZW-!U>`98Y(E:_(!&O6[4%:VA*0"*K#;JST!? M[;)X"?W`]`">>:X;S(.[&1)B/\:"'K?TV?Z/S:`[K)ED-7,HLFS4Z[/V7Y'K MN.=B_PV9\H*BRHK\#.35+"=;OO/]K]5J8(Z($VYW:ZYG#0J7(8$C<@U@@*RU M%+TE*Z#*LK)1J50BR,+E,(2WE&RJ0K>OI>RV9!6!U(T7+Z"F:-4&5.AG$UZ\ MV`!*W\#JPA^C<>5:/9"VRE*Y7*/KV-F"N1"PM;-1F8"@_SKM\W,Z$7%Z5C^I^8H;!EMR MHT$K7'.AT!][EA/T)3_HN6%0+3)6?;,-;]HG9Q^=8GEO)M#5-K2OCB]!LHGY M%X&QYPX\C@ MY`)[(^:J(2/FJJ$(S*.2AQI%/XW_/%#7HX@3WXGGR!P8>#"M=G] MC%]'IN4`,E.*+!NU:,2YI%D(E"905*P^)PSL[T/[W449/!*$GL-(&)5\0C(R M:3KC:4VOK\DTATSU^BZ2J:[+,^4H)03S16R&M+2=@'C@A*-K6DF4?FG*D5LK M*#/LU*P0+=LK39-"@5(#$#TU)L<7)G&%F"J%PCU#7%=U1%Q7C0G^F+7YM5JT MFZG]G-PR),%#\/TGQLGCB@GN4">X0Z(84;W2H7.%W:`S)HYI!Q;QRQFVR=-3 MJN`;?;?.R+>KK\5KCG@9!A,OHQ&+U[1T<9%92K0*%/`)12N/E;BXYQ]J*CO4 MD`X-744Z-)A2_H[IT&PRLZ79C,R6?ZM6G58U*8GI.6;?-@=SP:)"83OCF\[` M%5KHCCW=A\PS;OE0IZ3)C#Y9WEU2:;.'S6TX\]R`4,WQVAS#F4F-.T+IX#_T M9,,-?IH]R&4\;B]FZYXZ%E4[_IG/A6+R0^O`H]CSB!?=<"I&&Q.KSK=3S1RD\N M'"N+4=0^A=.?8823\#>^IN<\8V%:DD$<_ZF2[1)HZ4 M01Y^^@FLGU5CSZI4'C1NE^H&7-,'ZY/0"HK1X-ME-+]'4VYD!D[6;HM[[&Y* MK!^Q?;+QU(&91RJ9^)^YFCGFQ__HP:&K``W%,%1-;C0T`$5IZ,8Z_O<8!>-_ M71N)8-]$(<#_DA[\%M(SNP&RTM+EEJQC=$]F(<`$F$4!?PMM#!6J+`JH*1R. 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MY7U-RFAW/YL#LCWC58#4RQ9I1Q-B M;W]1:*L7CD9W(AJP-'Q5D6/'%_Y]LIY7,O+_QVKF6"#_JJS5)_[_!^2EM?P_ M1D'Y#P/+GI'ZTUOZ;B+^''`2IM%2E%36KZ%0,6'!4:R9_(L#D@J9""+/3-YG MS4_?YF?L-^%+(>?=@TT>7@76,WR&0DNL!PLZ/!J,#52&V\)FDS[D.D+X- MD+X,D+H+P*G2Y&\!-6.=2/_>#*GP2>A&B734],I!VMQ6^C7\*%-1^8!?/L7H M5-F\?$)V?2`*^24&43_^787(E814N`^-LM#?]_VNZ?0Y7'&S7ZS^1/]O9F#Q&EF/:$IT3\<'UJW;0NZ[(NZ[(NZ[(NJRG_ )`U':7#L`4``` ` end -- David A. Bader Office: 505-277-6724 Assistant Professor and Regents' Lecturer FAX: 505-277-1439 Electrical and Computer Engineering Department University of New Mexico dbader@eece.unm.edu Albuquerque, NM 87131 http://www.eece.unm.edu/~dbader >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message