Date: Sat, 4 Jul 2009 08:50:12 GMT From: Wen Heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/136310: [Maintainer Update]biology/p5-Bio-Graphics:update to 1.97 Message-ID: <200907040850.n648oCdg059640@www.freebsd.org> Resent-Message-ID: <200907040900.n6490Gkd081185@freefall.freebsd.org>
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>Number: 136310 >Category: ports >Synopsis: [Maintainer Update]biology/p5-Bio-Graphics:update to 1.97 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Jul 04 09:00:16 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-Current >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #4: Fri Apr 10 16:36:28 HKT 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/wen1 i386 >Description: update to 1.97 from 1.95 >How-To-Repeat: >Fix: Patch attached with submission follows: --- Makefile.orig 2009-07-03 19:07:50.000000000 +0800 +++ Makefile 2009-07-04 01:00:49.000000000 +0800 @@ -6,7 +6,7 @@ # PORTNAME= Bio-Graphics -PORTVERSION= 1.95 +PORTVERSION= 1.97 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -35,6 +35,7 @@ Bio::Graphics::DrawTransmembrane.3 \ Bio::Graphics::Feature.3 \ Bio::Graphics::FeatureBase.3 \ + Bio::Graphics::FeatureDir.3 \ Bio::Graphics::FeatureFile.3 \ Bio::Graphics::FeatureFile::Iterator.3 \ Bio::Graphics::Glyph.3 \ @@ -60,9 +61,11 @@ Bio::Graphics::Glyph::generic.3 \ Bio::Graphics::Glyph::graded_segments.3 \ Bio::Graphics::Glyph::group.3 \ + Bio::Graphics::Glyph::hat.3 \ Bio::Graphics::Glyph::heat_map.3 \ Bio::Graphics::Glyph::heat_map_ideogram.3 \ Bio::Graphics::Glyph::heterogeneous_segments.3 \ + Bio::Graphics::Glyph::hidden.3 \ Bio::Graphics::Glyph::hybrid_plot.3 \ Bio::Graphics::Glyph::ideogram.3 \ Bio::Graphics::Glyph::image.3 \ @@ -73,12 +76,14 @@ Bio::Graphics::Glyph::minmax.3 \ Bio::Graphics::Glyph::oval.3 \ Bio::Graphics::Glyph::pentagram.3 \ + Bio::Graphics::Glyph::pairplot.3 \ Bio::Graphics::Glyph::phylo_align.3 \ Bio::Graphics::Glyph::pinsertion.3 \ Bio::Graphics::Glyph::primers.3 \ Bio::Graphics::Glyph::processed_transcript.3 \ Bio::Graphics::Glyph::protein.3 \ Bio::Graphics::Glyph::ragged_ends.3 \ + Bio::Graphics::Glyph::rainbow_gene.3 \ Bio::Graphics::Glyph::redgreen_box.3 \ Bio::Graphics::Glyph::redgreen_segment.3 \ Bio::Graphics::Glyph::repeating_shape.3 \ --- distinfo.orig 2009-07-03 19:07:59.000000000 +0800 +++ distinfo 2009-07-03 19:08:58.000000000 +0800 @@ -1,3 +1,3 @@ -MD5 (Bio-Graphics-1.95.tar.gz) = 60885538664998f668af0dbdb26fd8e9 -SHA256 (Bio-Graphics-1.95.tar.gz) = 543aac5f8a2d860ebfb242fb630fa810ef32dfcafce03217ca3fba1a2af701bd -SIZE (Bio-Graphics-1.95.tar.gz) = 624347 +MD5 (Bio-Graphics-1.97.tar.gz) = f83ffe265910b5275e7213617bf82199 +SHA256 (Bio-Graphics-1.97.tar.gz) = 6a91c11ea426f2f2bdc50fb5a983f825321d60a84ed6616c496bce238160c3b1 +SIZE (Bio-Graphics-1.97.tar.gz) = 636595 --- pkg-plist.orig 2009-07-03 19:08:08.000000000 +0800 +++ pkg-plist 2009-07-04 01:03:02.000000000 +0800 @@ -5,9 +5,13 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm %%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm %%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm %%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm %%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm @@ -22,6 +26,7 @@ %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm %%SITE_PERL%%/Bio/Graphics/FeatureBase.pm +%%SITE_PERL%%/Bio/Graphics/FeatureDir.pm %%SITE_PERL%%/Bio/Graphics/RendererI.pm %%SITE_PERL%%/Bio/Graphics/Util.pm %%SITE_PERL%%/Bio/Graphics/Pictogram.pm >Release-Note: >Audit-Trail: >Unformatted:
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