Date: Sun, 12 Feb 2012 02:50:55 +0900 From: KATO Tsuguru <tkato432@yahoo.com> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/164985: Update port: biology/gff2ps Message-ID: <20120212025055.f3c08822.tkato432@yahoo.com> Resent-Message-ID: <201202111810.q1BIA9JT084564@freefall.freebsd.org>
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>Number: 164985 >Category: ports >Synopsis: Update port: biology/gff2ps >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sat Feb 11 18:10:09 UTC 2012 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 7.4-RELEASE-p5 i386 >Organization: >Environment: >Description: - Update MASTER_SITES and WWW: line - Add LICENSE - Support PLIST_FILES Remove file: pkg-plist >How-To-Repeat: >Fix: diff -urN /usr/ports/biology/gff2ps/Makefile biology/gff2ps/Makefile --- /usr/ports/biology/gff2ps/Makefile 2008-06-07 00:19:04.000000000 +0900 +++ biology/gff2ps/Makefile 2012-02-10 23:03:49.000000000 +0900 @@ -9,36 +9,47 @@ PORTVERSION= 0.98d PORTREVISION= 2 CATEGORIES= biology -MASTER_SITES= ftp://www1.imim.es/pub/gff_tools/gff2ps/:prog \ - http://www1.imim.es/software/gfftools/gff2ps_docs/manual/:doc -DISTFILES= ${PORTNAME}_v${PORTVERSION}.gz:prog ${GFF2PS_MAN}.gz:doc +MASTER_SITES= ftp://genome.crg.es/pub/gff_tools/gff2ps/ \ + http://genome.crg.es/software/gfftools/gff2ps_docs/manual/:doc +DISTFILES= ${PORTNAME}_v${PORTVERSION}.gz +.if !defined(NOPORTDOCS) +DISTFILES+= ${GFF2PS_MAN}.gz:doc +.endif MAINTAINER= ports@FreeBSD.org COMMENT= Converts gff-formated genomic data-sets to PostScript +LICENSE= GPLv2 # (or later) + RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \ bash:${PORTSDIR}/shells/bash -GFF2PS_MAN= MANUAL_GFF2PS_v0.96.ps -PATCH_WRKSRC= ${WRKDIR} - +NO_WRKSUBDIR= yes NO_BUILD= yes -post-patch: - @${REINPLACE_CMD} -e 's,^#!/bin/bash,#!${LOCALBASE}/bin/bash,; \ - s,/usr/local/bin/gawk,${LOCALBASE}/bin/gawk,' ${WRKDIR}/gff2ps +PORTDOCS= ${GFF2PS_MAN} +PLIST_FILES= bin/${PORTNAME} + +GFF2PS_MAN= MANUAL_GFF2PS_v0.96.ps do-extract: @${MKDIR} ${WRKDIR} @${GZCAT} ${DISTDIR}/${PORTNAME}_v${PORTVERSION}.gz \ > ${WRKDIR}/${PORTNAME} +.if !defined(NOPORTDOCS) @${GZCAT} ${DISTDIR}/${GFF2PS_MAN}.gz > ${WRKDIR}/${GFF2PS_MAN} +.endif + +post-patch: + @${REINPLACE_CMD} -e \ + 's|^#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \ + s|/usr/local/bin/gawk|${LOCALBASE}/bin/gawk|' ${WRKSRC}/gff2ps do-install: - @${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin -.ifndef(NOPORTDOCS) + ${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin +.if !defined(NOPORTDOCS) @${MKDIR} ${DOCSDIR} - @${INSTALL_DATA} ${WRKDIR}/${GFF2PS_MAN} ${DOCSDIR} + ${INSTALL_DATA} ${WRKDIR}/${GFF2PS_MAN} ${DOCSDIR} .endif .include <bsd.port.mk> diff -urN /usr/ports/biology/gff2ps/pkg-descr biology/gff2ps/pkg-descr --- /usr/ports/biology/gff2ps/pkg-descr 2002-02-13 11:54:31.000000000 +0900 +++ biology/gff2ps/pkg-descr 2012-02-10 22:52:03.000000000 +0900 @@ -1,6 +1,6 @@ -gff2ps is a script program developed with the aim of converting gff-formatted -records into high quality one-dimensional plots in PostScript. Such plots maybe -useful for comparing genomic structures and to visualizing outputs from genome -annotation programs. +gff2ps is a script program developed with the aim of converting +gff-formatted records into high quality one-dimensional plots in +PostScript. Such plots maybe useful for comparing genomic structures +and to visualizing outputs from genome annotation programs. -WWW: http://www1.imim.es/software/gfftools/GFF2PS.html +WWW: http://genome.crg.es/software/gfftools/GFF2PS.html diff -urN /usr/ports/biology/gff2ps/pkg-plist biology/gff2ps/pkg-plist --- /usr/ports/biology/gff2ps/pkg-plist 2003-10-22 18:29:54.000000000 +0900 +++ biology/gff2ps/pkg-plist 1970-01-01 09:00:00.000000000 +0900 @@ -1,3 +0,0 @@ -bin/gff2ps -%%PORTDOCS%%%%DOCSDIR%%/MANUAL_GFF2PS_v0.96.ps -%%PORTDOCS%%@dirrm %%DOCSDIR%% >Release-Note: >Audit-Trail: >Unformatted:
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