From owner-freebsd-ports-bugs@FreeBSD.ORG Tue Jan 24 19:00:25 2006 Return-Path: X-Original-To: freebsd-ports-bugs@hub.freebsd.org Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id 9FBAA16A41F for ; Tue, 24 Jan 2006 19:00:25 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id F1CE043D5D for ; Tue, 24 Jan 2006 19:00:19 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.13.4/8.13.4) with ESMTP id k0OJ0Jm9095771 for ; Tue, 24 Jan 2006 19:00:19 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.13.4/8.13.4/Submit) id k0OJ0JRO095770; Tue, 24 Jan 2006 19:00:19 GMT (envelope-from gnats) Date: Tue, 24 Jan 2006 19:00:19 GMT Message-Id: <200601241900.k0OJ0JRO095770@freefall.freebsd.org> To: freebsd-ports-bugs@FreeBSD.org From: Jason Bacon Cc: Subject: Re: ports/91918: New port for MINC (Medical Imaging NetCDF) X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list Reply-To: Jason Bacon List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 24 Jan 2006 19:00:25 -0000 The following reply was made to PR ports/91918; it has been noted by GNATS. From: Jason Bacon To: bug-followup@FreeBSD.org, bacon@smithers.neuro.mcw.edu Cc: Subject: Re: ports/91918: New port for MINC (Medical Imaging NetCDF) Date: Tue, 24 Jan 2006 12:57:10 -0600 --Boundary-00=_Hin1DsRaXJBNb1i Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: 7bit Content-Disposition: inline I discovered a couple of items were missing from pkg-plist in my original pr. I made a few improvements to the Makefile as well. Since no one has responded to this yet, I'm assuming that it hasn't been worked on at this point, so I'm sending a new shar file. If someone has already been working on this, and it would be easier to work with diffs from the original, just let me know. Thanks, Jason -- Jason W. Bacon Systems Manager, fMRI Research Labs Medical College of Wisconsin 8701 Watertown Plank Rd Room MFRC 4037 Milwaukee, WI 53226 (414) 456-5881 (414) 456-6562 FAX --Boundary-00=_Hin1DsRaXJBNb1i Content-Type: text/plain; charset="us-ascii"; name="minc.shar" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="minc.shar" # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # minc # minc/Makefile # minc/pkg-descr # minc/distinfo # minc/pkg-message # minc/pkg-plist # echo c - minc mkdir -p minc > /dev/null 2>&1 echo x - minc/Makefile sed 's/^X//' >minc/Makefile << 'END-of-minc/Makefile' X############################################################################ X# New ports collection Makefile for: minc 1.x (Medical Imaging NetCDF) X# Date created: 21 Dec 2005 X# Whom: jbacon X# X# $FreeBSD$ X# X X############################################################################ X# http://www.bic.mni.mcgill.ca/software/minc/ X# is the ultimate source for MINC, and will always contain the latest X# source release. If this port is not up to date enough for you, X# you can download the latest sources and build manually. On FreeBSD, X# you must configure with the environment variable LDFLAGS set to X# ${LOCALBASE}/lib so that the configure script will find libnetcdf. X# Of course, the netcdf port must be installed first. X XPORTNAME= minc XPORTVERSION= 1.4 XCATEGORIES= science biology XMASTER_SITES= http://www.bic.mni.mcgill.ca/software/distribution/packages/ \ X http://www.neuro.mcw.edu/~bacon/Ports/distfiles/ X XMAINTAINER= bacon@smithers.neuro.mcw.edu XCOMMENT= Medical Imaging NetCDF X XLIB_DEPENDS= netcdf.1:${PORTSDIR}/math/netcdf X XINSTALLS_SHLIB= yes X XUSE_LIBTOOL_VER= 15 X XCONFLICTS= minc-[2-9]* X X# Build parameters XWRKSRC= ${WRKDIR}/minc-${PORTVERSION} X XMAN1= dcm2mnc.1 \ X ecattominc.1 \ X invert_raw_image.1 \ X minc_modify_header.1 \ X mincaverage.1 \ X minccalc.1 \ X mincconcat.1 \ X minccopy.1 \ X mincdiff.1 \ X mincedit.1 \ X mincexpand.1 \ X mincextract.1 \ X mincheader.1 \ X mincinfo.1 \ X minclookup.1 \ X mincmakescalar.1 \ X mincmakevector.1 \ X mincmath.1 \ X mincpik.1 \ X mincresample.1 \ X mincreshape.1 \ X mincstats.1 \ X minctoecat.1 \ X minctoraw.1 \ X mincview.1 \ X mincwindow.1 \ X mnc2nii.1 \ X nii2mnc.1 \ X rawtominc.1 \ X transformtags.1 \ X upet2mnc.1 \ X voxeltoworld.1 \ X xfmconcat.1 \ X xfminvert.1 XMAN3= ParseArgv.3 X XHAS_CONFIGURE= yes XCONFIGURE_ENV= CFLAGS="-I${LOCALBASE}/include" LDFLAGS="-L${LOCALBASE}/lib" XCONFIGURE_ARGS= --enable-shared=yes --enable-static=yes X Xpost-install: X ${CAT} pkg-message X X.include END-of-minc/Makefile echo x - minc/pkg-descr sed 's/^X//' >minc/pkg-descr << 'END-of-minc/pkg-descr' XMINC (Medical Imaging NetCDF) is a medical imaging data format and an Xassociated set of tools and libraries. MINC was created in 1993 by Peter XNeelin at the McConnell Brain Imaging Centre of the Montreal Neurological XInstitute. Many others have contributed to the design and implementation XMINC over the years. X XWWW: http://www.bic.mni.mcgill.ca/software/minc/ X XPort maintainer: Jason W. Bacon X bacon@smithers.neuro.mcw.edu END-of-minc/pkg-descr echo x - minc/distinfo sed 's/^X//' >minc/distinfo << 'END-of-minc/distinfo' XMD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070 XSHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f XSIZE (minc-1.4.tar.gz) = 1213768 END-of-minc/distinfo echo x - minc/pkg-message sed 's/^X//' >minc/pkg-message << 'END-of-minc/pkg-message' X============================================================================= XFor questions or comments regarding this port, please contact the Xport maintainer: bacon@smithers.neuro.mcw.edu X XFor MINC usage, please visit the MINC WEB site at X Xhttp://www.bic.mni.mcgill.ca/software/minc/ X============================================================================= END-of-minc/pkg-message echo x - minc/pkg-plist sed 's/^X//' >minc/pkg-plist << 'END-of-minc/pkg-plist' Xbin/dcm2mnc Xbin/ecattominc Xbin/invert_raw_image Xbin/minc_modify_header Xbin/mincaverage Xbin/minccalc Xbin/mincconcat Xbin/minccopy Xbin/mincdiff Xbin/mincedit Xbin/mincexpand Xbin/mincextract Xbin/mincheader Xbin/minchistory Xbin/mincinfo Xbin/minclookup Xbin/mincmakescalar Xbin/mincmakevector Xbin/mincmath Xbin/mincpik Xbin/mincresample Xbin/mincreshape Xbin/mincstats Xbin/minctoecat Xbin/minctoraw Xbin/mincview Xbin/mincwindow Xbin/mnc2nii Xbin/nii2mnc Xbin/rawtominc Xbin/transformtags Xbin/upet2mnc Xbin/voxeltoworld Xbin/worldtovoxel Xbin/xfmconcat Xbin/xfminvert Xinclude/ParseArgv.h Xinclude/minc.h Xinclude/minc_simple.h Xinclude/nd_loop.h Xinclude/time_stamp.h Xinclude/volume_io.h Xinclude/volume_io/alloc.h Xinclude/volume_io/arrays.h Xinclude/volume_io/basic.h Xinclude/volume_io/def_math.h Xinclude/volume_io/files.h Xinclude/volume_io/geom_structs.h Xinclude/volume_io/geometry.h Xinclude/volume_io/internal_volume_io.h Xinclude/volume_io/multidim.h Xinclude/volume_io/progress.h Xinclude/volume_io/string_funcs.h Xinclude/volume_io/system_dependent.h Xinclude/volume_io/transforms.h Xinclude/volume_io/vol_io_prototypes.h Xinclude/volume_io/volume.h Xinclude/volume_io/volume_cache.h Xinclude/voxel_loop.h Xlib/libminc.a Xlib/libminc.so Xlib/libminc.so.1 Xlib/libvolume_io.a Xlib/libvolume_io.so Xlib/libvolume_io.so.0 Xshare/nls/POSIX Xshare/nls/en_US.US-ASCII X@dirrm include/volume_io END-of-minc/pkg-plist exit --Boundary-00=_Hin1DsRaXJBNb1i--