Skip site navigation (1)Skip section navigation (2)
Date:      Fri, 20 Jul 2012 16:33:32 +0000 (UTC)
From:      Niclas Zeising <zeising@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r301234 - in head/science/minc2: . files
Message-ID:  <201207201633.q6KGXWbC015673@svn.freebsd.org>

next in thread | raw e-mail | index | archive | help
Author: zeising
Date: Fri Jul 20 16:33:32 2012
New Revision: 301234
URL: http://svn.freebsd.org/changeset/ports/301234

Log:
  Update to version 2.0.18 [1]
  Fix build with clang [2]
  Change WWW in pkg-descr and pkg-message to point to current web side [3]
  
  PR:		ports/169925 [1]
  Submitted by:	Jason Bacon <jwbacon@tds.net> (maintainer) [1], kwm [2], [3]
  Approved by:	maintainer, kwm (mentor)

Added:
  head/science/minc2/files/
  head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c   (contents, props changed)
Modified:
  head/science/minc2/Makefile
  head/science/minc2/distinfo
  head/science/minc2/pkg-descr
  head/science/minc2/pkg-message
  head/science/minc2/pkg-plist

Modified: head/science/minc2/Makefile
==============================================================================
--- head/science/minc2/Makefile	Fri Jul 20 16:32:07 2012	(r301233)
+++ head/science/minc2/Makefile	Fri Jul 20 16:33:32 2012	(r301234)
@@ -16,25 +16,23 @@
 # Of course, the netcdf port must be installed first.
 
 PORTNAME=	minc
-PORTVERSION=	2.0.09
-PORTREVISION=	1
+PORTVERSION=	2.0.18
 CATEGORIES=	science biology
-MASTER_SITES=	http://www.bic.mni.mcgill.ca/users/bert/ \
-		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+MASTER_SITES=	http://www.nitrc.org/frs/download.php/801/
 
 MAINTAINER=	jwbacon@tds.net
 COMMENT=	Medical Imaging NetCDF
 
 LIB_DEPENDS=	netcdf.4:${PORTSDIR}/science/netcdf \
-		hdf5.0:${PORTSDIR}/science/hdf5
+		hdf5:${PORTSDIR}/science/hdf5
 
 USE_AUTOTOOLS=	libtool
 USE_LDCONFIG=	yes
-CPPFLAGS+=	${PTHREAD_CFLAGS} -I${LOCALBASE}/include
+CPPFLAGS+=	${PTHREAD_CFLAGS} -I${LOCALBASE}/include -DH5_USE_16_API
 LDFLAGS+=	-L${LOCALBASE}/lib ${PTHREAD_LIBS}
 CONFIGURE_ARGS=	--enable-shared=yes --enable-static=yes
 
-CONFLICTS=	minc-1*
+CONFLICTS=	minc-1* zh-tk-[0-9]*
 LATEST_LINK=	minc2
 
 MAN1=	dcm2mnc.1 \
@@ -71,9 +69,12 @@ MAN1=	dcm2mnc.1 \
 	rawtominc.1 \
 	transformtags.1 \
 	upet2mnc.1 \
+	vff2mnc.1 \
 	voxeltoworld.1 \
 	xfmconcat.1 \
+	xfmflip.1 \
 	xfminvert.1
+
 MAN3=	ParseArgv.3
 
 post-install:

Modified: head/science/minc2/distinfo
==============================================================================
--- head/science/minc2/distinfo	Fri Jul 20 16:32:07 2012	(r301233)
+++ head/science/minc2/distinfo	Fri Jul 20 16:33:32 2012	(r301234)
@@ -1,2 +1,2 @@
-SHA256 (minc-2.0.09.tar.gz) = b55907a5dd26c1b98b39f6cb81133336d7c794d4f7d4ad38b02561a9cc489390
-SIZE (minc-2.0.09.tar.gz) = 1418085
+SHA256 (minc-2.0.18.tar.gz) = 674cc89c43edfdb1957251c0124ea83252740c667cf3c4d9fc6183dcdb10f3e5
+SIZE (minc-2.0.18.tar.gz) = 1628038

Added: head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c	Fri Jul 20 16:33:32 2012	(r301234)
@@ -0,0 +1,11 @@
+--- conversion/minctoecat/machine_indep.c.orig	2012-07-20 17:16:13.000000000 +0200
++++ conversion/minctoecat/machine_indep.c	2012-07-20 17:17:48.000000000 +0200
+@@ -84,7 +84,7 @@
+ 	bufr[1] =  ret >>16;
+ }
+ #else  /* BIG ENDIAN : sun hp sgi*/
+-ftovaxf(orig,number)
++void ftovaxf(orig,number)
+   unsigned short number[2];
+   float orig;
+ {

Modified: head/science/minc2/pkg-descr
==============================================================================
--- head/science/minc2/pkg-descr	Fri Jul 20 16:32:07 2012	(r301233)
+++ head/science/minc2/pkg-descr	Fri Jul 20 16:33:32 2012	(r301234)
@@ -4,7 +4,7 @@ Neelin at the McConnell Brain Imaging Ce
 Institute. Many others have contributed to the design and implementation 
 MINC over the years.
 
-WWW: http://www.bic.mni.mcgill.ca/software/minc/
+WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC  
 
 Port maintainer: Jason W. Bacon
 		 jwbacon@tds.net

Modified: head/science/minc2/pkg-message
==============================================================================
--- head/science/minc2/pkg-message	Fri Jul 20 16:32:07 2012	(r301233)
+++ head/science/minc2/pkg-message	Fri Jul 20 16:33:32 2012	(r301234)
@@ -4,5 +4,5 @@ port maintainer: jwbacon@tds.net
 
 For MINC usage, please visit the MINC WEB site at
 
-http://www.bic.mni.mcgill.ca/software/minc/
+http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
 =============================================================================

Modified: head/science/minc2/pkg-plist
==============================================================================
--- head/science/minc2/pkg-plist	Fri Jul 20 16:32:07 2012	(r301233)
+++ head/science/minc2/pkg-plist	Fri Jul 20 16:33:32 2012	(r301234)
@@ -33,9 +33,11 @@ bin/nii2mnc
 bin/rawtominc
 bin/transformtags
 bin/upet2mnc
+bin/vff2mnc
 bin/voxeltoworld
 bin/worldtovoxel
 bin/xfmconcat
+bin/xfmflip
 bin/xfminvert
 include/ParseArgv.h
 include/minc.h



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201207201633.q6KGXWbC015673>