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Date:      Wed, 20 Feb 2019 21:06:27 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv6-default][science/py-spglib] Failed for py36-spglib-1.12.0 in build
Message-ID:  <201902202106.x1KL6RDm004390@beefy8.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/science/py-spglib/Makefile 491680 2019-01-31 04:47:08Z yuri $
Log URL:        http://beefy8.nyi.freebsd.org/data/head-armv6-default/p493136_s344218/logs/py36-spglib-1.12.0.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p493136_s344218
Log:

=>> Building science/py-spglib
build started at Wed Feb 20 21:05:17 UTC 2019
port directory: /usr/ports/science/py-spglib
package name: py36-spglib-1.12.0
building for: FreeBSD head-armv6-default-job-24 13.0-CURRENT FreeBSD 13.0-CURRENT 1300012 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-spglib/Makefile 491680 2019-01-31 04:47:08Z yuri $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1300012
Job Id: 24




!!! Jail is newer than host. (Jail: 1300012, Host: 1300009) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-spglib-1.12.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv6-default-job-24] Installing pkg-1.10.5_5...
[head-armv6-default-job-24] Extracting pkg-1.10.5_5: .......... done
===>   py36-spglib-1.12.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-spglib-1.12.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.12.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.12.0 for building
=> SHA256 Checksum OK for spglib-1.12.0.post3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.12.0 for building
===>  Extracting for py36-spglib-1.12.0
=> SHA256 Checksum OK for spglib-1.12.0.post3.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py36-spglib-1.12.0
===========================================================================
=======================<phase: build-depends  >============================
===>   py36-spglib-1.12.0 depends on package: py36-numpy>0 - not found
===>   Installing existing package /packages/All/py36-numpy-1.15.4_1,1.txz
[head-armv6-default-job-24] Installing py36-numpy-1.15.4_1,1...
[head-armv6-default-job-24] `-- Installing blas-3.5.0_5...
[head-armv6-default-job-24] |   `-- Installing gcc8-8.2.0_4...
[head-armv6-default-job-24] |   | `-- Installing binutils-2.32,1...
[head-armv6-default-job-24] |   |   `-- Installing gettext-runtime-0.19.8.1_2...
[head-armv6-default-job-24] |   |   | `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-24] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-24] |   |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[head-armv6-default-job-24] |   | `-- Extracting binutils-2.32,1: .......... done
[head-armv6-default-job-24] |   | `-- Installing gmp-6.1.2_1...
[head-armv6-default-job-24] |   | `-- Extracting gmp-6.1.2_1: .......... done
[head-armv6-default-job-24] |   | `-- Installing mpc-1.1.0_2...
[head-armv6-default-job-24] |   |   `-- Installing mpfr-4.0.1_2...
[head-armv6-default-job-24] |   |   `-- Extracting mpfr-4.0.1_2: .......... done
[head-armv6-default-job-24] |   | `-- Extracting mpc-1.1.0_2: ......... done
[head-armv6-default-job-24] |   `-- Extracting gcc8-8.2.0_4: .......... done
[head-armv6-default-job-24] `-- Extracting blas-3.5.0_5: ....... done
[head-armv6-default-job-24] `-- Installing cblas-1.0_10...
[head-armv6-default-job-24] `-- Extracting cblas-1.0_10: ......... done
[head-armv6-default-job-24] `-- Installing lapack-3.5.0_6...
[head-armv6-default-job-24] `-- Extracting lapack-3.5.0_6: .......... done
[head-armv6-default-job-24] `-- Installing py36-setuptools-40.8.0...
[head-armv6-default-job-24] |   `-- Installing python36-3.6.8...
[head-armv6-default-job-24] |   | `-- Installing libffi-3.2.1_3...
[head-armv6-default-job-24] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-armv6-default-job-24] |   | `-- Installing readline-7.0.5...
[head-armv6-default-job-24] |   | `-- Extracting readline-7.0.5: .......... done
[head-armv6-default-job-24] |   `-- Extracting python36-3.6.8: .......... done
[head-armv6-default-job-24] `-- Extracting py36-setuptools-40.8.0: .......... done
[head-armv6-default-job-24] `-- Installing suitesparse-5.2.0_2...
[head-armv6-default-job-24] |   `-- Installing metis-5.1.0_7...
[head-armv6-default-job-24] |   `-- Extracting metis-5.1.0_7: .......... done
[head-armv6-default-job-24] |   `-- Installing openblas-0.2.20_7,1...
[head-armv6-default-job-24] |   `-- Extracting openblas-0.2.20_7,1: ......... done
[head-armv6-default-job-24] `-- Extracting suitesparse-5.2.0_2: .......... done
[head-armv6-default-job-24] Extracting py36-numpy-1.15.4_1,1: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.8:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36

===========================================================================
Message from py36-setuptools-40.8.0:

*******************************************************************

  Only /usr/local/bin/easy_install-3.6 script has been installed
  since Python 3.6 is not the default Python version.

*******************************************************************
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py36-spglib-1.12.0 depends on package: py36-numpy>0 - found
===>   Returning to build of py36-spglib-1.12.0
===>   py36-spglib-1.12.0 depends on package: py36-setuptools>0 - found
===>   py36-spglib-1.12.0 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-spglib-1.12.0
setuptools is used.
running config
/usr/local/lib/python3.6/site-packages/setuptools/dist.py:475: UserWarning: Normalizing '1.12.0-3' to '1.12.0.post3'
  normalized_version,
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-spglib-1.12.0
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-13.0-CURRENT-arm-3.6
creating build/lib.freebsd-13.0-CURRENT-arm-3.6/spglib
copying spglib/__init__.py -> build/lib.freebsd-13.0-CURRENT-arm-3.6/spglib
copying spglib/spglib.py -> build/lib.freebsd-13.0-CURRENT-arm-3.6/spglib
running build_ext
/usr/local/lib/python3.6/site-packages/setuptools/dist.py:475: UserWarning: Normalizing '1.12.0-3' to '1.12.0.post3'
  normalized_version,
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 147, in <module>
    tests_require=['nose'])
  File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 973, in run_command
    cmd_obj.ensure_finalized()
  File "/usr/local/lib/python3.6/distutils/cmd.py", line 107, in ensure_finalized
    self.finalize_options()
  File "setup.py", line 18, in finalize_options
    import numpy
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-spglib



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