Date: Mon, 21 Sep 2020 18:14:57 +0000 (UTC) From: =?UTF-8?Q?Stefan_E=c3=9fer?= <se@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r549476 - in head/biology/freebayes: . files Message-ID: <202009211814.08LIEvn7099187@repo.freebsd.org>
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Author: se Date: Mon Sep 21 18:14:57 2020 New Revision: 549476 URL: https://svnweb.freebsd.org/changeset/ports/549476 Log: Fix build with -fno-common Added: head/biology/freebayes/files/patch-SeqLib_bwa_rle.h (contents, props changed) head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h (contents, props changed) Modified: head/biology/freebayes/Makefile Modified: head/biology/freebayes/Makefile ============================================================================== --- head/biology/freebayes/Makefile Mon Sep 21 18:12:57 2020 (r549475) +++ head/biology/freebayes/Makefile Mon Sep 21 18:14:57 2020 (r549476) @@ -3,7 +3,7 @@ PORTNAME= freebayes DISTVERSIONPREFIX= v DISTVERSION= 1.2.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org Added: head/biology/freebayes/files/patch-SeqLib_bwa_rle.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/freebayes/files/patch-SeqLib_bwa_rle.h Mon Sep 21 18:14:57 2020 (r549476) @@ -0,0 +1,11 @@ +--- SeqLib/bwa/rle.h.orig 2016-10-13 18:10:17 UTC ++++ SeqLib/bwa/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block)) Added: head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h Mon Sep 21 18:14:57 2020 (r549476) @@ -0,0 +1,11 @@ +--- SeqLib/fermi-lite/rle.h.orig 2016-09-01 20:47:53 UTC ++++ SeqLib/fermi-lite/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block))
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