From owner-svn-ports-all@freebsd.org Mon Sep 21 18:14:58 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id B02003F81C3; Mon, 21 Sep 2020 18:14:58 +0000 (UTC) (envelope-from se@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BwCJy4J2qz4c1Q; Mon, 21 Sep 2020 18:14:58 +0000 (UTC) (envelope-from se@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 76EF412529; Mon, 21 Sep 2020 18:14:58 +0000 (UTC) (envelope-from se@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 08LIEwuJ099190; Mon, 21 Sep 2020 18:14:58 GMT (envelope-from se@FreeBSD.org) Received: (from se@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 08LIEvn7099187; Mon, 21 Sep 2020 18:14:57 GMT (envelope-from se@FreeBSD.org) Message-Id: <202009211814.08LIEvn7099187@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: se set sender to se@FreeBSD.org using -f From: =?UTF-8?Q?Stefan_E=c3=9fer?= Date: Mon, 21 Sep 2020 18:14:57 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r549476 - in head/biology/freebayes: . files X-SVN-Group: ports-head X-SVN-Commit-Author: se X-SVN-Commit-Paths: in head/biology/freebayes: . files X-SVN-Commit-Revision: 549476 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 21 Sep 2020 18:14:58 -0000 Author: se Date: Mon Sep 21 18:14:57 2020 New Revision: 549476 URL: https://svnweb.freebsd.org/changeset/ports/549476 Log: Fix build with -fno-common Added: head/biology/freebayes/files/patch-SeqLib_bwa_rle.h (contents, props changed) head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h (contents, props changed) Modified: head/biology/freebayes/Makefile Modified: head/biology/freebayes/Makefile ============================================================================== --- head/biology/freebayes/Makefile Mon Sep 21 18:12:57 2020 (r549475) +++ head/biology/freebayes/Makefile Mon Sep 21 18:14:57 2020 (r549476) @@ -3,7 +3,7 @@ PORTNAME= freebayes DISTVERSIONPREFIX= v DISTVERSION= 1.2.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org Added: head/biology/freebayes/files/patch-SeqLib_bwa_rle.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/freebayes/files/patch-SeqLib_bwa_rle.h Mon Sep 21 18:14:57 2020 (r549476) @@ -0,0 +1,11 @@ +--- SeqLib/bwa/rle.h.orig 2016-10-13 18:10:17 UTC ++++ SeqLib/bwa/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block)) Added: head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h Mon Sep 21 18:14:57 2020 (r549476) @@ -0,0 +1,11 @@ +--- SeqLib/fermi-lite/rle.h.orig 2016-09-01 20:47:53 UTC ++++ SeqLib/fermi-lite/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block))