From owner-svn-ports-all@freebsd.org Fri Feb 24 18:57:58 2017 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 97BFFCEC9AB; Fri, 24 Feb 2017 18:57:58 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 454C5DD5; Fri, 24 Feb 2017 18:57:58 +0000 (UTC) (envelope-from danilo@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id v1OIvvEf005085; Fri, 24 Feb 2017 18:57:57 GMT (envelope-from danilo@FreeBSD.org) Received: (from danilo@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id v1OIvve8005082; Fri, 24 Feb 2017 18:57:57 GMT (envelope-from danilo@FreeBSD.org) Message-Id: <201702241857.v1OIvve8005082@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: danilo set sender to danilo@FreeBSD.org using -f From: Danilo Egea Gondolfo Date: Fri, 24 Feb 2017 18:57:57 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r434741 - head/biology/iolib X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 24 Feb 2017 18:57:58 -0000 Author: danilo Date: Fri Feb 24 18:57:56 2017 New Revision: 434741 URL: https://svnweb.freebsd.org/changeset/ports/434741 Log: - Update to 1.14.9 - Use github Modified: head/biology/iolib/Makefile head/biology/iolib/distinfo head/biology/iolib/pkg-plist Modified: head/biology/iolib/Makefile ============================================================================== --- head/biology/iolib/Makefile Fri Feb 24 18:50:36 2017 (r434740) +++ head/biology/iolib/Makefile Fri Feb 24 18:57:56 2017 (r434741) @@ -2,9 +2,8 @@ # $FreeBSD$ PORTNAME= io_lib -PORTVERSION= 1.14.8 +PORTVERSION= 1.14.9 CATEGORIES= biology -MASTER_SITES= SF/staden/${PORTNAME}/${PORTVERSION} MAINTAINER= danilo@FreeBSD.org COMMENT= General purpose trace file (and Experiment File) reading interface @@ -13,7 +12,11 @@ LICENSE= BSD3CLAUSE LIB_DEPENDS= libcurl.so:ftp/curl -USES= gmake libtool +USE_GITHUB= yes +GH_ACCOUNT= jkbonfield +GH_TAGNAME= ${PORTNAME}-${PORTVERSION:S/./-/g} + +USES= autoreconf gmake libtool GNU_CONFIGURE= yes USE_LDCONFIG= yes INSTALL_TARGET= install-strip Modified: head/biology/iolib/distinfo ============================================================================== --- head/biology/iolib/distinfo Fri Feb 24 18:50:36 2017 (r434740) +++ head/biology/iolib/distinfo Fri Feb 24 18:57:56 2017 (r434741) @@ -1,2 +1,3 @@ -SHA256 (io_lib-1.14.8.tar.gz) = 3bd560309fd6d70b14bbb8230e1baf8706b804eb6201220bb6c3d6db72003d1b -SIZE (io_lib-1.14.8.tar.gz) = 2217122 +TIMESTAMP = 1487946049 +SHA256 (jkbonfield-io_lib-1.14.9-io_lib-1-14-9_GH0.tar.gz) = 077044d525e9dd76f94ee83b0ab19cd655b08348cc81bbdaa84e39c622280a4a +SIZE (jkbonfield-io_lib-1.14.9-io_lib-1-14-9_GH0.tar.gz) = 1396092 Modified: head/biology/iolib/pkg-plist ============================================================================== --- head/biology/iolib/pkg-plist Fri Feb 24 18:50:36 2017 (r434740) +++ head/biology/iolib/pkg-plist Fri Feb 24 18:57:56 2017 (r434741) @@ -1,6 +1,7 @@ bin/append_sff bin/convert_trace bin/cram_dump +bin/cram_filter bin/cram_index bin/cram_size bin/extract_fastq @@ -39,6 +40,7 @@ include/io_lib/abi.h include/io_lib/alf.h include/io_lib/array.h include/io_lib/bam.h +include/io_lib/bgzip.h include/io_lib/binning.h include/io_lib/compress.h include/io_lib/compression.h @@ -86,7 +88,7 @@ include/io_lib/ztr.h lib/libstaden-read.a lib/libstaden-read.so lib/libstaden-read.so.11 -lib/libstaden-read.so.11.0.6 +lib/libstaden-read.so.11.1.0 man/man1/scramble.1.gz man/man1/srf2fasta.1.gz man/man1/srf2fastq.1.gz