Date: Thu, 20 Dec 2018 05:28:44 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r487841 - in head/science: . agrum Message-ID: <201812200528.wBK5SiPI064379@repo.freebsd.org>
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Author: yuri Date: Thu Dec 20 05:28:44 2018 New Revision: 487841 URL: https://svnweb.freebsd.org/changeset/ports/487841 Log: New port: science/agrum: Graphical modeler for Bayesian networks, influence diagrams, etc Added: head/science/agrum/ head/science/agrum/Makefile (contents, props changed) head/science/agrum/distinfo (contents, props changed) head/science/agrum/pkg-descr (contents, props changed) head/science/agrum/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Thu Dec 20 05:08:48 2018 (r487840) +++ head/science/Makefile Thu Dec 20 05:28:44 2018 (r487841) @@ -24,6 +24,7 @@ SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni + SUBDIR += agrum SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom Added: head/science/agrum/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/agrum/Makefile Thu Dec 20 05:28:44 2018 (r487841) @@ -0,0 +1,23 @@ +# $FreeBSD$ + +PORTNAME= agrum +DISTVERSION= 0.13.4 +CATEGORIES= science math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Graphical modeler for Bayesian networks, influence diagrams, etc + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= cmake:outsource compiler:c++17-lang +USE_GITLAB= yes +GL_SITE= https://gitlab.com +GL_ACCOUNT= agrumery +GL_PROJECT= aGrUM +GL_COMMIT= 7fb897064bd26e2844164bad191c97173c71262e +USE_LDCONFIG= yes + +CMAKE_OFF= BUILD_PYTHON USE_SWIG + +.include <bsd.port.mk> Added: head/science/agrum/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/agrum/distinfo Thu Dec 20 05:28:44 2018 (r487841) @@ -0,0 +1,3 @@ +TIMESTAMP = 1545281136 +SHA256 (agrumery-aGrUM-7fb897064bd26e2844164bad191c97173c71262e_GL0.tar.gz) = 149009ec2ae030cc0efd4e75c875ed914af7f620a9f4976c48324daa19f38614 +SIZE (agrumery-aGrUM-7fb897064bd26e2844164bad191c97173c71262e_GL0.tar.gz) = 13346677 Added: head/science/agrum/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/agrum/pkg-descr Thu Dec 20 05:28:44 2018 (r487841) @@ -0,0 +1,13 @@ +aGrUM is a C++ library for graphical models. It is designed for easily building +applications using graphical models such as Bayesian networks, influence +diagrams, decision trees, GAI networks or Markov decision processes. + +aGrUM is written to provide the basic building blocks to perform the +following tasks: +* designing graphical models, +* learning graphical models, +* elicitation of graphical models, +* inference within graphical models, +* planification. + +WWW: https://agrum.gitlab.io/ Added: head/science/agrum/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/agrum/pkg-plist Thu Dec 20 05:28:44 2018 (r487841) @@ -0,0 +1,841 @@ +include/agrum/BN/BayesNet.h +include/agrum/BN/BayesNetFactory.h +include/agrum/BN/BayesNetFactory_tpl.h +include/agrum/BN/BayesNetFragment.h +include/agrum/BN/BayesNetFragment_tpl.h +include/agrum/BN/BayesNet_tpl.h +include/agrum/BN/IBayesNet.h +include/agrum/BN/IBayesNetFactory.h +include/agrum/BN/IBayesNet_tpl.h +include/agrum/BN/algorithms/BayesBall.h +include/agrum/BN/algorithms/BayesBall_inl.h +include/agrum/BN/algorithms/BayesBall_tpl.h +include/agrum/BN/algorithms/MarkovBlanket.h +include/agrum/BN/algorithms/MarkovBlanket_inl.h +include/agrum/BN/algorithms/barrenNodesFinder.h +include/agrum/BN/algorithms/barrenNodesFinder_inl.h +include/agrum/BN/algorithms/barrenNodesFinder_tpl.h +include/agrum/BN/algorithms/dSeparation.h +include/agrum/BN/algorithms/dSeparation_inl.h +include/agrum/BN/algorithms/dSeparation_tpl.h +include/agrum/BN/algorithms/divergence/GibbsKL.h +include/agrum/BN/algorithms/divergence/GibbsKL_tpl.h +include/agrum/BN/algorithms/divergence/KL.h +include/agrum/BN/algorithms/divergence/KL_tpl.h +include/agrum/BN/algorithms/divergence/bruteForceKL.h +include/agrum/BN/algorithms/divergence/bruteForceKL_tpl.h +include/agrum/BN/algorithms/essentialGraph.h +include/agrum/BN/algorithms/essentialGraph_inl.h +include/agrum/BN/algorithms/structuralComparator.h +include/agrum/BN/algorithms/structuralComparator_tpl.h +include/agrum/BN/generator/IBayesNetGenerator.h +include/agrum/BN/generator/IBayesNetGenerator_tpl.h +include/agrum/BN/generator/ICPTDisturber.h +include/agrum/BN/generator/ICPTDisturber_tpl.h +include/agrum/BN/generator/ICPTGenerator.h +include/agrum/BN/generator/ICPTGenerator_tpl.h +include/agrum/BN/generator/MCBayesNetGenerator.h +include/agrum/BN/generator/MCBayesNetGenerator_tpl.h +include/agrum/BN/generator/maxInducedWidthMCBayesNetGenerator.h +include/agrum/BN/generator/maxInducedWidthMCBayesNetGenerator_tpl.h +include/agrum/BN/generator/maxParentsMCBayesNetGenerator.h +include/agrum/BN/generator/maxParentsMCBayesNetGenerator_tpl.h +include/agrum/BN/generator/simpleBayesNetGenerator.h +include/agrum/BN/generator/simpleBayesNetGenerator_tpl.h +include/agrum/BN/generator/simpleCPTDisturber.h +include/agrum/BN/generator/simpleCPTDisturber_tpl.h +include/agrum/BN/generator/simpleCPTGenerator.h +include/agrum/BN/generator/simpleCPTGenerator_tpl.h +include/agrum/BN/inference/GibbsSampling.h +include/agrum/BN/inference/GibbsSampling_tpl.h +include/agrum/BN/inference/MonteCarloSampling.h +include/agrum/BN/inference/MonteCarloSampling_tpl.h +include/agrum/BN/inference/ShaferShenoyInference.h +include/agrum/BN/inference/ShaferShenoyInference_tpl.h +include/agrum/BN/inference/importanceSampling.h +include/agrum/BN/inference/importanceSampling_tpl.h +include/agrum/BN/inference/lazyPropagation.h +include/agrum/BN/inference/lazyPropagation_tpl.h +include/agrum/BN/inference/loopyBeliefPropagation.h +include/agrum/BN/inference/loopyBeliefPropagation_tpl.h +include/agrum/BN/inference/loopySamplingInference.h +include/agrum/BN/inference/loopySamplingInference_tpl.h +include/agrum/BN/inference/tools/BayesNetInference.h +include/agrum/BN/inference/tools/BayesNetInference_tpl.h +include/agrum/BN/inference/tools/approximateInference.h +include/agrum/BN/inference/tools/estimator.h +include/agrum/BN/inference/tools/estimator_tpl.h +include/agrum/BN/inference/tools/evidenceInference.h +include/agrum/BN/inference/tools/evidenceInference_tpl.h +include/agrum/BN/inference/tools/gibbsOperator.h +include/agrum/BN/inference/tools/gibbsOperator_tpl.h +include/agrum/BN/inference/tools/jointTargetedInference.h +include/agrum/BN/inference/tools/jointTargetedInference_tpl.h +include/agrum/BN/inference/tools/marginalTargetedInference.h +include/agrum/BN/inference/tools/marginalTargetedInference_tpl.h +include/agrum/BN/inference/tools/relevantPotentialsFinderType.h +include/agrum/BN/inference/tools/samplingInference.h +include/agrum/BN/inference/tools/samplingInference_tpl.h +include/agrum/BN/inference/variableElimination.h +include/agrum/BN/inference/variableElimination_tpl.h +include/agrum/BN/inference/weightedSampling.h +include/agrum/BN/inference/weightedSampling_tpl.h +include/agrum/BN/io/BIF/BIFReader.h +include/agrum/BN/io/BIF/BIFReader_tpl.h +include/agrum/BN/io/BIF/BIFWriter.h +include/agrum/BN/io/BIF/BIFWriter_tpl.h +include/agrum/BN/io/BIF/cocoR/Parser.h +include/agrum/BN/io/BIF/cocoR/Scanner.h +include/agrum/BN/io/BIFXML/BIFXMLBNReader.h +include/agrum/BN/io/BIFXML/BIFXMLBNReader_tpl.h +include/agrum/BN/io/BIFXML/BIFXMLBNWriter.h +include/agrum/BN/io/BIFXML/BIFXMLBNWriter_tpl.h +include/agrum/BN/io/BNReader.h +include/agrum/BN/io/BNReader_tpl.h +include/agrum/BN/io/BNWriter.h +include/agrum/BN/io/BNWriter_tpl.h +include/agrum/BN/io/DSL/DSLReader.h +include/agrum/BN/io/DSL/DSLReader_tpl.h +include/agrum/BN/io/DSL/DSLWriter.h +include/agrum/BN/io/DSL/DSLWriter_tpl.h +include/agrum/BN/io/DSL/cocoR/Parser.h +include/agrum/BN/io/DSL/cocoR/Scanner.h +include/agrum/BN/io/UAI/UAIReader.h +include/agrum/BN/io/UAI/UAIReader_tpl.h +include/agrum/BN/io/UAI/UAIWriter.h +include/agrum/BN/io/UAI/UAIWriter_tpl.h +include/agrum/BN/io/UAI/cocoR/Parser.h +include/agrum/BN/io/UAI/cocoR/Scanner.h +include/agrum/BN/io/cnf/CNFWriter.h +include/agrum/BN/io/cnf/CNFWriter_tpl.h +include/agrum/BN/io/cnf/ContextualDependenciesCNFWriter.h +include/agrum/BN/io/cnf/ContextualDependenciesCNFWriter_tpl.h +include/agrum/BN/io/cnf/FactorisedValuesCNFWriter.h +include/agrum/BN/io/cnf/FactorisedValuesCNFWriter_tpl.h +include/agrum/BN/io/cnf/GeneralizedCNFWriter.h +include/agrum/BN/io/cnf/GeneralizedCNFWriter_tpl.h +include/agrum/BN/io/net/cocoR/Parser.h +include/agrum/BN/io/net/cocoR/Scanner.h +include/agrum/BN/io/net/netReader.h +include/agrum/BN/io/net/netReader_tpl.h +include/agrum/BN/io/net/netWriter.h +include/agrum/BN/io/net/netWriter_tpl.h +include/agrum/CN/CNLoopyPropagation.h +include/agrum/CN/CNLoopyPropagation_tpl.h +include/agrum/CN/CNMonteCarloSampling.h +include/agrum/CN/CNMonteCarloSampling_tpl.h +include/agrum/CN/LpInterface.h +include/agrum/CN/LpInterface_inl.h +include/agrum/CN/LpInterface_tpl.h +include/agrum/CN/LrsWrapper.h +include/agrum/CN/LrsWrapper_tpl.h +include/agrum/CN/credalNet.h +include/agrum/CN/credalNet_tpl.h +include/agrum/CN/inferenceEngine.h +include/agrum/CN/inferenceEngine_tpl.h +include/agrum/CN/multipleInferenceEngine.h +include/agrum/CN/multipleInferenceEngine_tpl.h +include/agrum/CN/varMod2BNsMap.h +include/agrum/CN/varMod2BNsMap_tpl.h +include/agrum/FMDP/IfmdpFactory.h +include/agrum/FMDP/SDyna/Strategies/IDecisionStrategy.h +include/agrum/FMDP/SDyna/Strategies/ILearningStrategy.h +include/agrum/FMDP/SDyna/Strategies/IPlanningStrategy.h +include/agrum/FMDP/SDyna/sdyna.h +include/agrum/FMDP/decision/E_GreedyDecider.h +include/agrum/FMDP/decision/lazyDecider.h +include/agrum/FMDP/decision/randomDecider.h +include/agrum/FMDP/decision/statisticalLazyDecider.h +include/agrum/FMDP/fmdp.h +include/agrum/FMDP/fmdpFactory.h +include/agrum/FMDP/fmdpFactory_tpl.h +include/agrum/FMDP/fmdp_tpl.h +include/agrum/FMDP/io/dat/cocoR/Parser.h +include/agrum/FMDP/io/dat/cocoR/Scanner.h +include/agrum/FMDP/io/dat/fmdpDatReader.h +include/agrum/FMDP/io/dat/fmdpDatReader_tpl.h +include/agrum/FMDP/io/fmdpReader.h +include/agrum/FMDP/io/fmdpReader_tpl.h +include/agrum/FMDP/learning/core/chiSquare.h +include/agrum/FMDP/learning/core/contingencyTable.h +include/agrum/FMDP/learning/core/contingencyTable_tpl.h +include/agrum/FMDP/learning/core/templateStrategy.h +include/agrum/FMDP/learning/core/testPolicy/Chi2TestPolicy.h +include/agrum/FMDP/learning/core/testPolicy/Chi2TestPolicy_tpl.h +include/agrum/FMDP/learning/core/testPolicy/GTestPolicy.h +include/agrum/FMDP/learning/core/testPolicy/GTestPolicy_tpl.h +include/agrum/FMDP/learning/core/testPolicy/ITestPolicy.h +include/agrum/FMDP/learning/core/testPolicy/leastSquareTestPolicy.h +include/agrum/FMDP/learning/core/testPolicy/leastSquareTestPolicy_tpl.h +include/agrum/FMDP/learning/core/tupleHashFunc.h +include/agrum/FMDP/learning/datastructure/IVisitableGraphLearner.h +include/agrum/FMDP/learning/datastructure/imddi.h +include/agrum/FMDP/learning/datastructure/imddi_tpl.h +include/agrum/FMDP/learning/datastructure/incrementalGraphLearner.h +include/agrum/FMDP/learning/datastructure/incrementalGraphLearner_tpl.h +include/agrum/FMDP/learning/datastructure/iti.h +include/agrum/FMDP/learning/datastructure/iti_tpl.h +include/agrum/FMDP/learning/datastructure/leaves/abstractLeaf.h +include/agrum/FMDP/learning/datastructure/leaves/composedLeaf.h +include/agrum/FMDP/learning/datastructure/leaves/concreteLeaf.h +include/agrum/FMDP/learning/datastructure/leaves/fusionContext.h +include/agrum/FMDP/learning/datastructure/leaves/fusionContext_tpl.h +include/agrum/FMDP/learning/datastructure/leaves/leafAggregator.h +include/agrum/FMDP/learning/datastructure/leaves/leafPair.h +include/agrum/FMDP/learning/datastructure/nodeDatabase.h +include/agrum/FMDP/learning/datastructure/nodeDatabase_tpl.h +include/agrum/FMDP/learning/datastructure/variableselector.h +include/agrum/FMDP/learning/fmdpLearner.h +include/agrum/FMDP/learning/fmdpLearner_tpl.h +include/agrum/FMDP/learning/observation.h +include/agrum/FMDP/planning/IOperatorStrategy.h +include/agrum/FMDP/planning/actionSet.h +include/agrum/FMDP/planning/adaptiveRMaxPlaner.h +include/agrum/FMDP/planning/mddOperatorStrategy.h +include/agrum/FMDP/planning/mddOperatorStrategy_tpl.h +include/agrum/FMDP/planning/structuredPlaner.h +include/agrum/FMDP/planning/structuredPlaner_tpl.h +include/agrum/FMDP/planning/treeOperatorStrategy.h +include/agrum/FMDP/planning/treeOperatorStrategy_tpl.h +include/agrum/FMDP/simulation/abstractSimulator.h +include/agrum/FMDP/simulation/factorySimulator.h +include/agrum/FMDP/simulation/fmdpSimulator.h +include/agrum/FMDP/simulation/statesChecker.h +include/agrum/FMDP/simulation/statesCounter.h +include/agrum/FMDP/simulation/taxiSimulator.h +include/agrum/ID/generator/UTGenerator.h +include/agrum/ID/generator/influenceDiagramGenerator.h +include/agrum/ID/generator/influenceDiagramGenerator_tpl.h +include/agrum/ID/generator/simpleUTGenerator.h +include/agrum/ID/inference/IInfluenceDiagramInference.h +include/agrum/ID/inference/IInfluenceDiagramInference_tpl.h +include/agrum/ID/inference/influenceDiagramInference.h +include/agrum/ID/inference/influenceDiagramInference_tpl.h +include/agrum/ID/influenceDiagram.h +include/agrum/ID/influenceDiagram_tpl.h +include/agrum/ID/io/BIFXML/BIFXMLIDReader.h +include/agrum/ID/io/BIFXML/BIFXMLIDReader_tpl.h +include/agrum/ID/io/BIFXML/BIFXMLIDWriter.h +include/agrum/ID/io/BIFXML/BIFXMLIDWriter_tpl.h +include/agrum/ID/io/IDReader.h +include/agrum/ID/io/IDReader_tpl.h +include/agrum/ID/io/IDWriter.h +include/agrum/ID/io/IDWriter_tpl.h +include/agrum/PRM/IPRMFactory.h +include/agrum/PRM/PRM.h +include/agrum/PRM/PRMFactory.h +include/agrum/PRM/PRMFactory_tpl.h +include/agrum/PRM/PRM_tpl.h +include/agrum/PRM/classBayesNet.h +include/agrum/PRM/classBayesNet_tpl.h +include/agrum/PRM/classDependencyGraph.h +include/agrum/PRM/classDependencyGraph_tpl.h +include/agrum/PRM/elements/PRMAggregate.h +include/agrum/PRM/elements/PRMAggregate_tpl.h +include/agrum/PRM/elements/PRMAttribute.h +include/agrum/PRM/elements/PRMAttribute_tpl.h +include/agrum/PRM/elements/PRMClass.h +include/agrum/PRM/elements/PRMClassElement.h +include/agrum/PRM/elements/PRMClassElementContainer.h +include/agrum/PRM/elements/PRMClassElementContainer_tpl.h +include/agrum/PRM/elements/PRMClassElement_tpl.h +include/agrum/PRM/elements/PRMClass_tpl.h +include/agrum/PRM/elements/PRMFormAttribute.h +include/agrum/PRM/elements/PRMFormAttribute_tpl.h +include/agrum/PRM/elements/PRMFuncAttribute.h +include/agrum/PRM/elements/PRMFuncAttribute_tpl.h +include/agrum/PRM/elements/PRMInstance.h +include/agrum/PRM/elements/PRMInstance_tpl.h +include/agrum/PRM/elements/PRMInterface.h +include/agrum/PRM/elements/PRMInterface_tpl.h +include/agrum/PRM/elements/PRMObject.h +include/agrum/PRM/elements/PRMObject_inl.h +include/agrum/PRM/elements/PRMParameter.h +include/agrum/PRM/elements/PRMParameter_tpl.h +include/agrum/PRM/elements/PRMReferenceSlot.h +include/agrum/PRM/elements/PRMReferenceSlot_tpl.h +include/agrum/PRM/elements/PRMScalarAttribute.h +include/agrum/PRM/elements/PRMScalarAttribute_tpl.h +include/agrum/PRM/elements/PRMSlotChain.h +include/agrum/PRM/elements/PRMSlotChain_tpl.h +include/agrum/PRM/elements/PRMSystem.h +include/agrum/PRM/elements/PRMSystem_tpl.h +include/agrum/PRM/elements/PRMType.h +include/agrum/PRM/elements/PRMType_tpl.h +include/agrum/PRM/generator/PRMGenerator.h +include/agrum/PRM/generator/PRMGenerator_tpl.h +include/agrum/PRM/generator/clusteredLayerGenerator.h +include/agrum/PRM/generator/clusteredLayerGenerator_tpl.h +include/agrum/PRM/generator/layerGenerator.h +include/agrum/PRM/generator/layerGenerator_tpl.h +include/agrum/PRM/generator/nameGenerator.h +include/agrum/PRM/generator/nameGenerator_inl.h +include/agrum/PRM/gspan/DFSCode.h +include/agrum/PRM/gspan/DFSCode_inl.h +include/agrum/PRM/gspan/DFSTree.h +include/agrum/PRM/gspan/DFSTree_tpl.h +include/agrum/PRM/gspan/edgeCode.h +include/agrum/PRM/gspan/edgeCode_inl.h +include/agrum/PRM/gspan/edgeGrowth.h +include/agrum/PRM/gspan/edgeGrowth_tpl.h +include/agrum/PRM/gspan/interfaceGraph.h +include/agrum/PRM/gspan/interfaceGraph_tpl.h +include/agrum/PRM/gspan/pattern.h +include/agrum/PRM/gspan/pattern_inl.h +include/agrum/PRM/gspan/searchStrategy.h +include/agrum/PRM/gspan/searchStrategy_tpl.h +include/agrum/PRM/inference/PRMInference.h +include/agrum/PRM/inference/PRMInference_tpl.h +include/agrum/PRM/inference/SVE.h +include/agrum/PRM/inference/SVED.h +include/agrum/PRM/inference/SVED_tpl.h +include/agrum/PRM/inference/SVE_tpl.h +include/agrum/PRM/inference/groundedInference.h +include/agrum/PRM/inference/groundedInference_tpl.h +include/agrum/PRM/inference/gspan.h +include/agrum/PRM/inference/gspan_tpl.h +include/agrum/PRM/inference/structuredBayesBall.h +include/agrum/PRM/inference/structuredBayesBall_tpl.h +include/agrum/PRM/inference/structuredInference.h +include/agrum/PRM/inference/structuredInference_tpl.h +include/agrum/PRM/instanceBayesNet.h +include/agrum/PRM/instanceBayesNet_tpl.h +include/agrum/PRM/o3prm/O3ClassFactory.h +include/agrum/PRM/o3prm/O3ClassFactory_tpl.h +include/agrum/PRM/o3prm/O3InterfaceFactory.h +include/agrum/PRM/o3prm/O3InterfaceFactory_tpl.h +include/agrum/PRM/o3prm/O3NameSolver.h +include/agrum/PRM/o3prm/O3NameSolver_tpl.h +include/agrum/PRM/o3prm/O3SystemFactory.h +include/agrum/PRM/o3prm/O3SystemFactory_tpl.h +include/agrum/PRM/o3prm/O3TypeFactory.h +include/agrum/PRM/o3prm/O3TypeFactory_tpl.h +include/agrum/PRM/o3prm/O3prm.h +include/agrum/PRM/o3prm/O3prmBNReader.h +include/agrum/PRM/o3prm/O3prmBNReader_tpl.h +include/agrum/PRM/o3prm/O3prmBNWriter.h +include/agrum/PRM/o3prm/O3prmBNWriter_tpl.h +include/agrum/PRM/o3prm/O3prmReader.h +include/agrum/PRM/o3prm/O3prmReader_tpl.h 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