Date: Sat, 03 Nov 2018 12:34:33 +0000 From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 232929] biology/bowtie fails to build with GCC 8 Message-ID: <bug-232929-7788@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D232929 Bug ID: 232929 Summary: biology/bowtie fails to build with GCC 8 Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: jwb@freebsd.org Reporter: gerald@FreeBSD.org Blocks: 231590 Flags: maintainer-feedback?(jwb@freebsd.org) Assignee: jwb@freebsd.org biology/bowtie has the following bit # FIXME: bowtie-align intermittently dumps core when compiled with clang # GCC 4.2 does not provide good performance USE_GCC=3D yes alas it now fails to build with GCC 8, blocking the update of the default version of GCC. Cf. http://package22.nyi.freebsd.org/data/112amd64-default-PR231590/2018-10-29_= 06h48m05s/logs/errors/bowtie-1.1.2_6.log ebwt.h: In member function 'uint32_t* Ebwt<TStr>::isa() const': ebwt.h:863:44: error: cannot convert 'TIndexOffU* const' {aka 'long unsigned int* const'} to 'uint32_t*' {aka 'unsigned int*'} in return uint32_t* isa() const { return _isa; } /* check */ ^~~~ How about retiring this port in favor of biology/bowtie2 ? Referenced Bugs: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D231590 [Bug 231590] [exp-run] Update GCC_DEFAULT from 7 to 8 --=20 You are receiving this mail because: You are the assignee for the bug.=
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