From owner-dev-commits-ports-main@freebsd.org Fri Sep 17 18:01:36 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id CDAFB6B7343; Fri, 17 Sep 2021 18:01:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HB1ww5TJSz4pqW; Fri, 17 Sep 2021 18:01:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 9B1DA1A048; Fri, 17 Sep 2021 18:01:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 18HI1a9s071026; Fri, 17 Sep 2021 18:01:36 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 18HI1acb071025; Fri, 17 Sep 2021 18:01:36 GMT (envelope-from git) Date: Fri, 17 Sep 2021 18:01:36 GMT Message-Id: <202109171801.18HI1acb071025@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Joseph Mingrone Subject: git: 3b937ad738af - main - biology/jellyfish: Switch to static tarball and update license info MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3b937ad738af5bdf96233d23bc6c1f7008085d85 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 17 Sep 2021 18:01:36 -0000 The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=3b937ad738af5bdf96233d23bc6c1f7008085d85 commit 3b937ad738af5bdf96233d23bc6c1f7008085d85 Author: Joseph Mingrone AuthorDate: 2021-09-16 16:50:28 +0000 Commit: Joseph Mingrone CommitDate: 2021-09-17 18:01:35 +0000 biology/jellyfish: Switch to static tarball and update license info The GitHub-generated tarballs require reautoconf and more dependencies including gettext, regardless whether the NLS knob is turned off. https://github.com/gmarcais/Jellyfish/issues/138#issuecomment-463272029 This update also fixes a build issue when the NLS knob was turned off. http://pkg.ftfl.ca/data/13amd64-default/2021-09-16_13h45m55s/logs/errors/Jellyfish-2.3.0_1.log Differential Revision: https://reviews.freebsd.org/D31984 Co-authored-by: Jason W. Bacon --- biology/jellyfish/Makefile | 15 ++++++++------- biology/jellyfish/distinfo | 6 +++--- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile index 4079f92b3c4f..d69f8a62f373 100644 --- a/biology/jellyfish/Makefile +++ b/biology/jellyfish/Makefile @@ -1,24 +1,25 @@ PORTNAME= Jellyfish DISTVERSIONPREFIX= v DISTVERSION= 2.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology +MASTER_SITES= https://github.com/gmarcais/${PORTNAME}/releases/download/v2.3.0/ # Custom distfile reduces dependencies +DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= Fast, memory-efficient counting of k-mers in DNA -LICENSE= GPLv3+ -LICENSE_FILE= ${WRKSRC}/LICENSE +LICENSE= BSD3CLAUSE GPLv3+ +LICENSE_COMB= dual +LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/LICENSE-BSD-3-Clause +LICENSE_FILE_GPLv3= ${WRKSRC}/LICENSE-GPL-3.0 -BUILD_DEPENDS= yaggo:devel/yaggo LIB_DEPENDS= libhts.so:biology/htslib -USES= autoreconf compiler:c++11-lib gmake libtool pathfix pkgconfig +USES= compiler:c++11-lib libtool USE_LDCONFIG= yes -USE_GITHUB= yes GNU_CONFIGURE= yes -GH_ACCOUNT= gmarcais INSTALL_TARGET= install-strip PLIST_SUB= VER=${PORTVERSION} diff --git a/biology/jellyfish/distinfo b/biology/jellyfish/distinfo index 8e77167cbbfa..9cb65c74783b 100644 --- a/biology/jellyfish/distinfo +++ b/biology/jellyfish/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1629646709 -SHA256 (gmarcais-Jellyfish-v2.3.0_GH0.tar.gz) = 23819da9edb579a0cfb8baac9eff473a9477f4f749930cdb754dce1d117495cd -SIZE (gmarcais-Jellyfish-v2.3.0_GH0.tar.gz) = 679144 +TIMESTAMP = 1631812776 +SHA256 (jellyfish-2.3.0.tar.gz) = e195b7cf7ba42a90e5e112c0ed27894cd7ac864476dc5fb45ab169f5b930ea5a +SIZE (jellyfish-2.3.0.tar.gz) = 1151287