Date: Wed, 6 Mar 2019 20:52:05 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-arm64-default][science/tinker] Failed for tinker-8.5.3 in build Message-ID: <201903062052.x26Kq5jk099203@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/tinker/Makefile 490442 2019-01-16 04:36:12Z yuri $ Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p494357_s344714/logs/tinker-8.5.3.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p494357_s344714 Log: =>> Building science/tinker build started at Wed Mar 6 20:27:59 UTC 2019 port directory: /usr/ports/science/tinker package name: tinker-8.5.3 building for: FreeBSD head-arm64-default-job-07 13.0-CURRENT FreeBSD 13.0-CURRENT 1300013 arm64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/tinker/Makefile 490442 2019-01-16 04:36:12Z yuri $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300002 Jail OSVERSION: 1300013 Job Id: 07 !!! Jail is newer than host. (Jail: 1300013, Host: 1300002) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300013 UNAME_v=FreeBSD 13.0-CURRENT 1300013 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for tinker-8.5.3: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples OPTIMIZED_FFLAGS=off: compilation optimizations ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- HAVE_G2C=yes F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/tinker" EXAMPLESDIR="share/examples/tinker" DATADIR="share/tinker" WWWDIR="www/tinker" ETCDIR="etc/tinker" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/tinker DOCSDIR=/usr/local/share/doc/tinker EXAMPLESDIR=/usr/local/share/examples/tinker WWWDIR=/usr/local/www/tinker ETCDIR=/usr/local/etc/tinker --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300013 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License TINKER accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> tinker-8.5.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-arm64-default-job-07] Installing pkg-1.10.5_5... [head-arm64-default-job-07] Extracting pkg-1.10.5_5: .......... done ===> tinker-8.5.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of tinker-8.5.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License TINKER accepted by the user => tinker-8.5.3.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://dasher.wustl.edu/tinker/downloads/tinker-8.5.3.tar.gz tinker-8.5.3.tar.gz 39 MB 6102 kBps 06s ===> Fetching all distfiles required by tinker-8.5.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License TINKER accepted by the user ===> Fetching all distfiles required by tinker-8.5.3 for building => SHA256 Checksum OK for tinker-8.5.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License TINKER accepted by the user ===> Fetching all distfiles required by tinker-8.5.3 for building ===> Extracting for tinker-8.5.3 => SHA256 Checksum OK for tinker-8.5.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ <snip> a - lights.o a - limits.o a - linmin.o a - makeint.o a - makeref.o a - makexyz.o a - math.o a - maxwell.o a - mdinit.o a - mdrest.o a - mdsave.o a - mdstat.o a - mdstuf.o a - mechanic.o a - merck.o a - merge.o a - minima.o a - molcul.o a - moldyn.o a - molecule.o a - moment.o a - moments.o a - mplpot.o a - mpole.o a - mrecip.o a - mutant.o a - mutate.o a - nblist.o a - neigh.o a - nextarg.o a - nexttext.o a - nonpol.o a - nose.o a - nspline.o a - nucleo.o a - number.o a - numeral.o a - numgrad.o a - ocvm.o a - omega.o a - opbend.o a - opdist.o a - openend.o a - openmp.o a - optinit.o a - optsave.o a - orbital.o a - orbits.o a - orient.o a - orthog.o a - output.o a - overlap.o a - params.o a - paths.o a - pbstuf.o a - pdb.o a - phipsi.o a - picalc.o a - piorbs.o a - pistuf.o a - pitors.o a - pme.o a - pmestuf.o a - pmpb.o a - polar.o a - polgrp.o a - polopt.o a - polpcg.o a - polpot.o a - poltcg.o a - polymer.o a - potent.o a - potfit.o a - precis.o a - precise.o a - pressure.o a - prmkey.o a - promo.o a - prtdyn.o a - prterr.o a - prtint.o a - prtmol2.o a - prtpdb.o a - prtprm.o a - prtseq.o a - prtxyz.o a - ptable.o a - qmstuf.o a - qrfact.o a - quatfit.o a - random.o a - rattle.o a - readdyn.o a - readgau.o a - readgdma.o a - readint.o a - readmol.o a - readmol2.o a - readpdb.o a - readprm.o a - readseq.o a - readxyz.o a - refer.o a - repel.o a - replica.o a - reppot.o a - resdue.o a - respa.o a - restrn.o a - rgddyn.o a - rgdstep.o a - rigid.o a - ring.o a - rings.o a - rmsfit.o a - rotbnd.o a - rotlist.o a - rotpole.o a - rxnfld.o a - rxnpot.o a - scales.o a - sdstep.o a - search.o a - sequen.o a - server.o a - shakeup.o a - shunt.o a - sigmoid.o a - simplex.o a - sizes.o a - sktstuf.o a - socket.o a - solute.o a - sort.o a - square.o a - stodyn.o a - strbnd.o a - strtor.o a - suffix.o a - surface.o a - surfatom.o a - switch.o a - syntrn.o a - tarray.o a - tcgstuf.o a - temper.o a - titles.o a - tncg.o a - torphase.o a - torpot.o a - torque.o a - tors.o a - torsions.o a - tortor.o a - tree.o a - trimtext.o a - unitcell.o a - units.o a - uprior.o a - urey.o a - urypot.o a - usage.o a - valfit.o a - vdw.o a - vdwpot.o a - verlet.o a - version.o a - vibs.o a - virial.o a - volume.o a - warp.o a - xtals.o a - xyzatm.o a - zatom.o a - zclose.o a - zcoord.o ranlib libtinker.a gfortran -Ofast -fopenmp -static-libgcc -o alchemy.x -L. -L/wrkdirs/usr/ports/science/tinker/work/tinker/lib/macos -L/wrkdirs/usr/ports/science/tinker/work/tinker/fftw/lib alchemy.o libtinker.a -lfftw3_threads -lfftw3; strip alchemy.x /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__gttf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__eqtf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__lttf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__floatditf@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__letf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__addtf3@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__divtf3@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__multf3@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__getf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__floatunditf@GCC_4.2.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__floatsitf@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__netf2@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__subtf3@GCC_3.0' /usr/local/bin/ld: /usr/local/lib/gcc8/gcc/aarch64-portbld-freebsd13.0/8.3.0/../../../libgfortran.so: undefined reference to `__unordtf2@GCC_4.5.0' collect2: error: ld returned 1 exit status strip: open alchemy.x failed: No such file or directory gmake[1]: *** [/wrkdirs/usr/ports/science/tinker/work/tinker/make/Makefile:777: alchemy.x] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/tinker/work/tinker/source' *** Error code 1 Stop. make: stopped in /usr/ports/science/tinker
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