From owner-svn-ports-all@freebsd.org Tue Sep 3 16:02:45 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id C5EBEE0A81; Tue, 3 Sep 2019 16:02:45 +0000 (UTC) (envelope-from dvl@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46NBYd3Dgcz3HYJ; Tue, 3 Sep 2019 16:02:45 +0000 (UTC) (envelope-from dvl@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 38F39563F; Tue, 3 Sep 2019 16:02:45 +0000 (UTC) (envelope-from dvl@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x83G2jG6028264; Tue, 3 Sep 2019 16:02:45 GMT (envelope-from dvl@FreeBSD.org) Received: (from dvl@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x83G2igY028261; Tue, 3 Sep 2019 16:02:44 GMT (envelope-from dvl@FreeBSD.org) Message-Id: <201909031602.x83G2igY028261@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: dvl set sender to dvl@FreeBSD.org using -f From: Dan Langille Date: Tue, 3 Sep 2019 16:02:44 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r510959 - in head/math: . py-pystan X-SVN-Group: ports-head X-SVN-Commit-Author: dvl X-SVN-Commit-Paths: in head/math: . py-pystan X-SVN-Commit-Revision: 510959 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 03 Sep 2019 16:02:45 -0000 Author: dvl Date: Tue Sep 3 16:02:44 2019 New Revision: 510959 URL: https://svnweb.freebsd.org/changeset/ports/510959 Log: Add PyStan: The Python Interface to Stan https://pystan.readthedocs.io/en/latest/ Submitted by: Gilbert Morgan (via private email) Added: head/math/py-pystan/ head/math/py-pystan/Makefile (contents, props changed) head/math/py-pystan/distinfo (contents, props changed) head/math/py-pystan/pkg-descr (contents, props changed) Modified: head/math/Makefile Modified: head/math/Makefile ============================================================================== --- head/math/Makefile Tue Sep 3 16:00:44 2019 (r510958) +++ head/math/Makefile Tue Sep 3 16:02:44 2019 (r510959) @@ -765,6 +765,7 @@ SUBDIR += py-pyodesys SUBDIR += py-pysparse SUBDIR += py-pysym + SUBDIR += py-pystan SUBDIR += py-python-louvain SUBDIR += py-pyvtk SUBDIR += py-quadprog Added: head/math/py-pystan/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/py-pystan/Makefile Tue Sep 3 16:02:44 2019 (r510959) @@ -0,0 +1,30 @@ +# $FreeBSD$ + +PORTNAME= pystan +PORTVERSION= 2.19.0.0 +CATEGORIES= math +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= gmm@tutanota.com +COMMENT= PyStan is the Python interface for Stan + +LICENSE= GPLv3 + +USES= python shebangfix +USE_PYTHON= autoplist distutils + +BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR} +BUILD_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} + +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR} +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} + +SHEBANG_FILES= ${WRKSRC}/pystan/stan/lib/stan_math/lib/upgrade-sundials.sh \ + ${WRKSRC}/pystan/stan/lib/stan_math/hooks/pre-commit \ + ${WRKSRC}/pystan/stan/lib/stan_math/runTests.py \ + +NO_ARCH= yes +NO_ARCH_IGNORE= _api.so _chains.so _misc.so + +.include Added: head/math/py-pystan/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/py-pystan/distinfo Tue Sep 3 16:02:44 2019 (r510959) @@ -0,0 +1,3 @@ +TIMESTAMP = 1563392208 +SHA256 (pystan-2.19.0.0.tar.gz) = b85301b960d5991918b40bd64a4e9321813657a9fc028e0f39edce7220a309eb +SIZE (pystan-2.19.0.0.tar.gz) = 16540340 Added: head/math/py-pystan/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/py-pystan/pkg-descr Tue Sep 3 16:02:44 2019 (r510959) @@ -0,0 +1,7 @@ +PyStan provides a Python interface to Stan, a package for Bayesian inference +using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo. + +For more information on Stan and its modeling language, see the Stan User's +Guide and Reference Manual at http://mc-stan.org/. + +WWW: https://github.com/stan-dev/pystan