Date: Fri, 13 Aug 2021 13:39:00 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 3ed2dd540f07 - main - biostar-tools: Add new deps to metaport Message-ID: <202108131339.17DDd0eb061769@gitrepo.freebsd.org>
next in thread | raw e-mail | index | archive | help
The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=3ed2dd540f07e1493b6f3532f65ae3548b9ad8cb commit 3ed2dd540f07e1493b6f3532f65ae3548b9ad8cb Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-08-13 13:37:48 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-08-13 13:37:48 +0000 biostar-tools: Add new deps to metaport csvkit, miller: Tools for working with comma-separated data py-ont-fast5-api: Library and tools for Oxford Nanopore fast5 files --- biology/biostar-tools/Makefile | 9 ++++++--- biology/biostar-tools/distinfo | 2 +- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index 067b37f79043..03da85bde096 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,5 +1,5 @@ PORTNAME= biostar-tools -PORTVERSION= 1.2.0 +PORTVERSION= 1.3.0 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -9,13 +9,15 @@ LICENSE= BSD2CLAUSE # For a current list see http://data.biostarhandbook.com/install/conda.txt. # Also included are some programs not listed above, but mentioned in the text. -# sra-tools is almost complete and will be added pending testing +# TODO: Add hdfview RUN_DEPENDS= wget>0:ftp/wget \ curl>0:ftp/curl \ nano>0:editors/nano \ parallel>0:sysutils/parallel \ seqkit>0:biology/seqkit \ csvtk>0:science/csvtk \ + ${PYTHON_PKGNAMEPREFIX}csvkit>0:textproc/py-csvkit@${PY_FLAVOR} \ + miller>0:textproc/miller \ ncbi-entrez-direct>0:biology/ncbi-entrez-direct \ readseq>0:biology/readseq \ snpeff>0:biology/snpeff \ @@ -48,7 +50,8 @@ RUN_DEPENDS= wget>0:ftp/wget \ vt>0:biology/vt \ ${PYTHON_PKGNAMEPREFIX}crossmap>0:biology/py-crossmap@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}goatools>0:biology/py-goatools@${PY_FLAVOR} \ - erminej>0:biology/erminej + erminej>0:biology/erminej \ + ${PYTHON_PKGNAMEPREFIX}ont-fast5-api>0:archivers/py-ont-fast5-api@${PY_FLAVOR} \ USES= metaport python diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index 62f5266710d0..47eeda80cda4 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1625833809 +TIMESTAMP = 1628861783
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202108131339.17DDd0eb061769>