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Bacon" Date: Sun, 5 May 2019 14:56:07 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r500860 - in head/biology/minimap2: . files X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: in head/biology/minimap2: . files X-SVN-Commit-Revision: 500860 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: 1E7F4958BC X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.96 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.96)[-0.957,0]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 05 May 2019 14:56:08 -0000 Author: jwb Date: Sun May 5 14:56:07 2019 New Revision: 500860 URL: https://svnweb.freebsd.org/changeset/ports/500860 Log: biology/minimap2: Upgrade to 2.17 Reported by: portscout Modified: head/biology/minimap2/Makefile head/biology/minimap2/distinfo (contents, props changed) head/biology/minimap2/files/patch-Makefile (contents, props changed) Modified: head/biology/minimap2/Makefile ============================================================================== --- head/biology/minimap2/Makefile Sun May 5 14:50:09 2019 (r500859) +++ head/biology/minimap2/Makefile Sun May 5 14:56:07 2019 (r500860) @@ -2,7 +2,7 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.16 +DISTVERSION= 2.17 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org Modified: head/biology/minimap2/distinfo ============================================================================== --- head/biology/minimap2/distinfo Sun May 5 14:50:09 2019 (r500859) +++ head/biology/minimap2/distinfo Sun May 5 14:56:07 2019 (r500860) @@ -1,3 +1,3 @@ -TIMESTAMP = 1555901297 -SHA256 (lh3-minimap2-v2.16_GH0.tar.gz) = 9d4f1c9f1c2b29c2560b7ad53b2210dabd82161a0f88184f423534bd289433c3 -SIZE (lh3-minimap2-v2.16_GH0.tar.gz) = 221287 +TIMESTAMP = 1557067380 +SHA256 (lh3-minimap2-v2.17_GH0.tar.gz) = 0a3eaa3ef3d9f9e41f48199cc4aac0508366ac644fc3e8fe05e3463acd23d20b +SIZE (lh3-minimap2-v2.17_GH0.tar.gz) = 224006 Modified: head/biology/minimap2/files/patch-Makefile ============================================================================== --- head/biology/minimap2/files/patch-Makefile Sun May 5 14:50:09 2019 (r500859) +++ head/biology/minimap2/files/patch-Makefile Sun May 5 14:56:07 2019 (r500860) @@ -1,8 +1,10 @@ ---- Makefile.orig 2019-02-28 20:49:24 UTC +--- Makefile.orig 2019-05-05 03:49:17 UTC +++ Makefile -@@ -1,11 +1,19 @@ +@@ -1,11 +1,21 @@ -CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra -CPPFLAGS= -DHAVE_KALLOC ++# Patches using ?= and adding install target were rejected by developers ++# https://github.com/lh3/minimap2/issues/388 +CFLAGS?= -g -Wall -O2 +CFLAGS+= -Wc++-compat #-Wextra +CPPFLAGS+= -DHAVE_KALLOC @@ -22,7 +24,7 @@ ifeq ($(arm_neon),) # if arm_neon is not defined ifeq ($(sse2only),) # if sse2only is not defined OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o -@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h +@@ -84,6 +94,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h $(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@ # other non-file targets