From owner-freebsd-amd64@FreeBSD.ORG Wed Jan 29 22:30:01 2014 Return-Path: Delivered-To: freebsd-amd64@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 71013CFE for ; Wed, 29 Jan 2014 22:30:01 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 49D311D5D for ; Wed, 29 Jan 2014 22:30:01 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.7/8.14.7) with ESMTP id s0TMU1sZ081606 for ; Wed, 29 Jan 2014 22:30:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.7/8.14.7/Submit) id s0TMU1jH081605; Wed, 29 Jan 2014 22:30:01 GMT (envelope-from gnats) Resent-Date: Wed, 29 Jan 2014 22:30:01 GMT Resent-Message-Id: <201401292230.s0TMU1jH081605@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-amd64@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Mitja Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 98A77C78 for ; Wed, 29 Jan 2014 22:27:29 +0000 (UTC) Received: from oldred.freebsd.org (oldred.freebsd.org [IPv6:2001:1900:2254:206a::50:4]) (using TLSv1 with cipher DHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 6A45E1D3C for ; Wed, 29 Jan 2014 22:27:29 +0000 (UTC) Received: from oldred.freebsd.org ([127.0.1.6]) by oldred.freebsd.org (8.14.5/8.14.7) with ESMTP id s0TMRTfC022443 for ; Wed, 29 Jan 2014 22:27:29 GMT (envelope-from nobody@oldred.freebsd.org) Received: (from nobody@localhost) by oldred.freebsd.org (8.14.5/8.14.5/Submit) id s0TMRTMN022430; Wed, 29 Jan 2014 22:27:29 GMT (envelope-from nobody) Message-Id: <201401292227.s0TMRTMN022430@oldred.freebsd.org> Date: Wed, 29 Jan 2014 22:27:29 GMT From: Mitja To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Subject: amd64/186259: Port math/sage cannot build on FreeBSD 10.0 X-Mailman-Approved-At: Wed, 29 Jan 2014 22:43:14 +0000 X-BeenThere: freebsd-amd64@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Porting FreeBSD to the AMD64 platform List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 29 Jan 2014 22:30:01 -0000 >Number: 186259 >Category: amd64 >Synopsis: Port math/sage cannot build on FreeBSD 10.0 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-amd64 >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Wed Jan 29 22:30:01 UTC 2014 >Closed-Date: >Last-Modified: >Originator: Mitja >Release: FreeBSD 10.0-RELEASE >Organization: >Environment: FreeBSD 10.0-RELEASE #1: Mon Jan 20 12:44:17 EST 2014 root@bla.bla.net:/usr/obj/usr/src/sys/GENERIC amd64 >Description: I cannot build port math/sage from FreeBSD-10.0 ALPHA to FreeBSD-10.0-RELEASE now and on the all betas and releases between. ===>>> Starting build for math/sage <<<=== ===>>> All dependencies are up to date ===> Cleaning for sage-math-5.13 ===> Found saved configuration for sage-math-5.13 ===> sage-math-5.13 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by sage-math-5.13 for building ===> Extracting for sage-math-5.13 => SHA256 Checksum OK for sage-5.13.tar. ===> Patching for sage-math-5.13 Patching cephes-2.8.p1: applying spkg-install Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- cephes-2.8.p1/spkg-install-orig 2013-03-30 20:48:35.000000000 +0000 |+++ cephes-2.8.p1/spkg-install 2013-03-30 20:48:57.000000000 +0000 -------------------------- Patching file cephes-2.8.p1/spkg-install using Plan A... Hunk #1 succeeded at 24. done Patching eclib-20120830: applying src_libsrc_eclib_interface.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- eclib-20120830/src/libsrc/eclib/interface.h-orig 2013-04-26 23:46:24.000000000 +0000 |+++ eclib-20120830/src/libsrc/eclib/interface.h 2013-04-26 23:47:09.000000000 +0000 -------------------------- Patching file eclib-20120830/src/libsrc/eclib/interface.h using Plan A... Hunk #1 succeeded at 48. done Patching maxima-5.29.1.p3: applying src_interfaces_xmaxima_Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- maxima-5.29.1.p1/src/interfaces/xmaxima/Makefile.in-orig 2013-05-09 02:26:31.000000000 +0000 |+++ maxima-5.29.1.p3/src/interfaces/xmaxima/Makefile.in 2013-05-09 02:30:12.000000000 +0000 -------------------------- Patching file maxima-5.29.1.p3/src/interfaces/xmaxima/Makefile.in using Plan A... Hunk #1 succeeded at 624. done Patching ncurses-5.9.p2: applying src_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- ncurses-5.9/src/configure.orig 2013-08-21 02:51:59.000000000 +0000 |+++ ncurses-5.9.p2/src/configure 2013-08-21 02:53:23.000000000 +0000 -------------------------- Patching file ncurses-5.9.p2/src/configure using Plan A... Hunk #1 succeeded at 5719. done Patching numpy-1.7.0: applying src_numpy_distutils_system_info.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- numpy-1.7.0/src/numpy/distutils/system_info.py.orig 2013-02-09 21:04:56.000000000 +0000 |+++ numpy-1.7.0/src/numpy/distutils/system_info.py 2013-05-27 21:51:12.000000000 +0000 -------------------------- Patching file numpy-1.7.0/src/numpy/distutils/system_info.py using Plan A... Hunk #1 succeeded at 983. done Patching ppl-1.1pre9.p0: applying src_demos_ppl_lpsol_ppl_lpsol.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- ppl-1.0.p0/src/demos/ppl_lpsol/ppl_lpsol.c.orig 2013-06-20 17:21:39.000000000 +0000 |+++ ppl-1.1pre9.p0/src/demos/ppl_lpsol/ppl_lpsol.c 2013-06-20 17:39:44.000000000 +0000 -------------------------- Patching file ppl-1.1pre9.p0/src/demos/ppl_lpsol/ppl_lpsol.c using Plan A... Hunk #1 succeeded at 534. done Patching pycrypto-2.1.0: applying patches_src.libtom.tomcrypt_pk.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- /dev/null 2012-04-08 01:30:00.000000000 +0000 |+++ pycrypto-2.1.0/patches_src.libtom.tomcrypt_pk.h 2012-04-08 01:30:26.000000000 +0000 -------------------------- (Creating file pycrypto-2.1.0/patches_src.libtom.tomcrypt_pk.h...) Patching file pycrypto-2.1.0/patches_src.libtom.tomcrypt_pk.h using Plan A... Empty context always matches. Hunk #1 succeeded at 1. done applying spkg-install Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- pycrypto-2.1.0/spkg-install-orig 2012-04-08 01:30:47.000000000 +0000 |+++ pycrypto-2.1.0/spkg-install 2012-04-08 01:31:41.000000000 +0000 -------------------------- Patching file pycrypto-2.1.0/spkg-install using Plan A... Hunk #1 succeeded at 12. done Patching python-2.7.5.p1: applying src_Doc_library_fcntl.rst Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- python-2.7.3.p0/src/Doc/library/fcntl.rst.orig 2011-06-11 15:46:23.000000000 +0000 |+++ python-2.7.5.p1/src/Doc/library/fcntl.rst 2012-04-22 00:31:48.000000000 +0000 -------------------------- Patching file python-2.7.5.p1/src/Doc/library/fcntl.rst using Plan A... Hunk #1 succeeded at 50. done applying src_Modules__ctypes_libffi_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- python-2.7.3.p0/src/Modules/_ctypes/libffi/configure.orig 2011-06-11 15:46:26.000000000 +0000 |+++ python-2.7.5.p1/src/Modules/_ctypes/libffi/configure 2012-04-22 00:23:14.000000000 +0000 -------------------------- Patching file python-2.7.5.p1/src/Modules/_ctypes/libffi/configure using Plan A... Hunk #1 succeeded at 6889 (offset 600 lines). Hunk #2 succeeded at 12859 with fuzz 2 (offset 1584 lines). done applying src_Modules_fcntlmodule.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- python-2.7.3.p0/src/Modules/fcntlmodule.c.orig 2011-06-11 15:46:27.000000000 +0000 |+++ python-2.7.5.p1/src/Modules/fcntlmodule.c 2012-04-22 00:23:34.000000000 +0000 -------------------------- Patching file python-2.7.5.p1/src/Modules/fcntlmodule.c using Plan A... Hunk #1 succeeded at 97. Hunk #2 succeeded at 113. Hunk #3 succeeded at 164. Hunk #4 succeeded at 186. done applying src_Python_thread_pthread.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- python-2.7.3.p0/src/Python/thread_pthread.h.orig 2011-06-11 15:46:28.000000000 +0000 |+++ python-2.7.5.p1/src/Python/thread_pthread.h 2012-04-22 00:23:46.000000000 +0000 -------------------------- Patching file python-2.7.5.p1/src/Python/thread_pthread.h using Plan A... Hunk #1 succeeded at 38. Hunk #2 succeeded at 61. Hunk #3 succeeded at 165. Hunk #4 succeeded at 194. Hunk #5 succeeded at 207. done applying src_setup.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- python-2.7.5.p1/src/setup.py-orig 2013-03-17 03:13:46.000000000 +0000 |+++ python-2.7.5.p1/src/setup.py 2013-03-17 03:15:11.000000000 +0000 -------------------------- Patching file python-2.7.5.p1/src/setup.py using Plan A... Hunk #1 succeeded at 721 (offset 79 lines). Hunk #2 succeeded at 760 (offset 79 lines). Hunk #3 succeeded at 1132 (offset 10 lines). Hunk #4 succeeded at 1331 with fuzz 2 (offset 83 lines). Hunk #5 succeeded at 1277 (offset 10 lines). Hunk #6 succeeded at 1535 (offset 99 lines). Hunk #7 succeeded at 1510 (offset 10 lines). Hunk #8 succeeded at 2183 (offset 101 lines). done Patching sage-5.13: applying doc_common_builder.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- sage-5.8.rc0/doc/common/builder.py-orig 2013-03-17 20:50:38.000000000 +0000 |+++ sage-5.13/doc/common/builder.py 2013-03-17 20:56:42.000000000 +0000 -------------------------- Patching file sage-5.13/doc/common/builder.py using Plan A... Hunk #1 succeeded at 274 (offset 2 lines). Hunk #2 succeeded at 469 (offset 2 lines). done Patching sympow-1.018.1.p11: applying src_disk.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- sympow-1.018.1.p11/src/disk.c-orig 2012-04-19 02:33:51.000000000 +0000 |+++ sympow-1.018.1.p11/src/disk.c 2012-04-19 02:34:22.000000000 +0000 -------------------------- Patching file sympow-1.018.1.p11/src/disk.c using Plan A... Hunk #1 succeeded at 39. done ===> sage-math-5.13 depends on executable: bash - found ===> sage-math-5.13 depends on file: /usr/local/share/texmf-dist/LICENSE.texmf - found ===> sage-math-5.13 depends on executable: mktexlsr - found ===> sage-math-5.13 depends on executable: gmake - found ===> sage-math-5.13 depends on executable: gcc46 - found ===> sage-math-5.13 depends on file: /usr/local/bin/as - found ===> sage-math-5.13 depends on file: /usr/local/bin/autoconf-2.69 - found ===> sage-math-5.13 depends on shared library: atlas - found ===> sage-math-5.13 depends on shared library: lapack - found ===> sage-math-5.13 depends on shared library: jpeg - found ===> sage-math-5.13 depends on shared library: tk86 - found ===> Configuring for sage-math-5.13 ===> Building for sage-math-5.13 gmake[2]: Entering directory `/usr/ports/math/sage/work/sage-5.13' mkdir -p logs cd spkg && \ "../spkg/pipestatus" \ "env SAGE_PARALLEL_SPKG_BUILD='' ./install all 2>&1" \ "tee -a ../logs/install.log" *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** .MAKE.LEVEL.ENV=MAKELEVEL ADDR2LINE=/usr/local/bin/addr2line AR=/usr/local/bin/ar ARCH=/usr/local/bin/ar AS=/usr/local/bin/as AUTOCONF=/usr/local/bin/autoconf-2.69 AUTOCONF_DIR=/usr/local/share/autoconf-2.69 AUTOCONF_VERSION=2.69 AUTOHEADER=/usr/local/bin/autoheader-2.69 AUTOIFNAMES=/usr/local/bin/ifnames-2.69 AUTOM4TE=/usr/local/bin/autom4te-2.69 AUTORECONF=/usr/local/bin/autoreconf-2.69 AUTOSCAN=/usr/local/bin/autoscan-2.69 AUTOUPDATE=/usr/local/bin/autoupdate-2.69 BLOCKSIZE=K BSD_INSTALL_DATA=install -o root -g wheel -m 444 BSD_INSTALL_LIB=install -s -o root -g wheel -m 444 BSD_INSTALL_MAN=install -o root -g wheel -m 444 BSD_INSTALL_PROGRAM=install -s -o root -g wheel -m 555 BSD_INSTALL_SCRIPT=install -o root -g wheel -m 555 CC=gcc46 CFLAGS=-pipe -Wl,-rpath=/usr/ports/math/sage/work/sage-5.13/local/lib -Wl,-rpath=/usr/local/lib/gcc46 COLORFGBG=0;15 CONFIG_DONE_SAGE=1 CPP=cpp46 CPPFILT=/usr/local/bin/c++filt CPPFLAGS= CXX=g++46 CXXFLAGS=-pipe -Wl,-rpath=/usr/ports/math/sage/work/sage-5.13/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -Wl,-rpath=/usr/ports/math/sage/work/sage-5.13/local/lib -Wl,-rpath=/usr/local/lib/gcc46 DBUS_SESSION_BUS_ADDRESS=unix:path=/tmp/dbus-3HFe8GxLg6,guid=7873e5070f3d4dcd5242981652e92729 DISPLAY=:0 DISPLAY_LIST= DISTDIR=/usr/ports/distfiles/ DI_FILES=/tmp/f-41106-DI-FILES.IIV5zE0z DOT_SAGE=/usr/ports/math/sage/work/sage-5.13/tmp/.sage EDITOR=vi F77=gfortran46 FFLAGS=-pipe -Wl,-rpath=/usr/ports/math/sage/work/sage-5.13/local/lib -Wl,-rpath=/usr/local/lib/gcc46 GPROF=/usr/local/bin/gprof GROUP=ajtim GS_LIB=/home/ajtim/.fonts GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/ajtim/.gtkrc-2.0:/usr/home/ajtim/.kde4/share/config/gtkrc-2.0 GTK_RC_FILES=/etc/gtk/gtkrc:/home/ajtim/.gtkrc:/usr/home/ajtim/.kde4/share/config/gtkrc HOME=/root HOST=lumiwa.farms.net HOSTTYPE=FreeBSD IPC_SAVE=/tmp/f-41106-IPC_SAVE.o9VkarIf KDE_FULL_SESSION=true KDE_MULTIHEAD=false KDE_SESSION_UID=1001 KDE_SESSION_VERSION=4 KONSOLE_DBUS_SERVICE=:1.109 KONSOLE_DBUS_SESSION=/Sessions/1 KONSOLE_DBUS_WINDOW=/Windows/1 KONSOLE_PROFILE_NAME=Shell LANGUAGE= LD=/usr/local/bin/ld LDFLAGS=-Wl,-rpath=/usr/ports/math/sage/work/sage-5.13/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46 LIBDIR=/usr/lib LOCALBASE=/usr/local LOCALBASE_COMPAT=/usr/local/lib/compat/pkg LOGNAME=ajtim MACHTYPE=x86_64 MAIL=/var/mail/ajtim MAKE=/usr/bin/make -j8 MAKEFLAGS=w --jobserver-fds=3,4 -j -- SYSTEMVERSION= OSVERSION=1000510 OSREL=10.0 OPSYS=FreeBSD CONFIG_DONE_SAGE=1 ARCH=/usr/local/bin/ar .MAKE.LEVEL.ENV=MAKELEVEL MAKELEVEL=3 MAKEOVERRIDES=${-*-command-variables-*-} MANPREFIX=/usr/local MFLAGS=-w --jobserver-fds=3,4 -j NB_DELETE= NM=/usr/local/bin/nm NO_DEP_UPDATES=no_dep_updates NO_LINT=YES OBJCOPY=/usr/local/bin/objcopy OBJDUMP=/usr/local/bin/objdump OPSYS=FreeBSD OSREL=10.0 OSTYPE=FreeBSD OSVERSION=1000510 PACKAGES=/usr/ports/packages PAGER=more PATH=/usr/ports/math/sage/work/sage-5.13/spkg/bin:/usr/ports/math/sage/work/sage-5.13/local/bin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin PERL5LIB= PM_BUILDING=pmbuildingmain PM_FORCE_CONFIG=pm_force_config PM_NEEDS_UPDATE= math/sage PM_PARENT_PID=41106 PM_PARENT_PORT=math/sage PREFIX=/usr/local PROFILEHOME= PWD=/usr/ports/math/sage/work/sage-5.13/spkg PYTHONPATH=/usr/ports/math/sage/work/sage-5.13/local QT_PLUGIN_PATH=/usr/home/ajtim/.kde4/lib/kde4/plugins/:/usr/local/kde4/lib/kde4/plugins/ RANLIB=/usr/local/bin/ranlib READELF=/usr/local/bin/readelf RUBYLIB=:/usr/local/kde4/lib/ruby/site_ruby/1.9:/usr/local/kde4/lib/ruby/site_ruby/1.9/amd64-freebsd10 SAGE_ATLAS_LIB=/usr/local/lib SAGE_FAT_BINARY=yes SAGE_INSTALL_GCC=no SAGE_LOCAL=/usr/ports/math/sage/work/sage-5.13/local SAGE_LOGS=/usr/ports/math/sage/work/sage-5.13/logs/pkgs SAGE_PARALLEL_SPKG_BUILD= SAGE_PORT=yes SAGE_ROOT=/usr/ports/math/sage/work/sage-5.13 SAGE_SPKG_INST=/usr/ports/math/sage/work/sage-5.13/spkg/installed SESSION_MANAGER=local/lumiwa.farms.net:/tmp/.ICE-unix/2216 SHELL=/bin/sh SHELL_SESSION_ID=12509662400a4b949d4936a7f650b467 SHLVL=5 SIZE=/usr/local/bin/size STRIGI_PLUGIN_PATH=:/usr/local/kde4/lib/strigi:/usr/local/lib/strigi STRINGS=/usr/local/bin/strings SYSTEMVERSION= TERM=xterm TMPDIR=/tmp UPGRADE_TOOL=portmaster USER=ajtim VENDOR=amd WINDOWID=77594653 WINDOWPATH=9 XAUTHORITY=/tmp/kde-ajtim/xauth-1001-_0 XCURSOR_PATH=/usr/local/kde4/share/icons::~/.icons:/usr/local/share/icons:/usr/local/share/pixmaps:/usr/local/lib/X11/icons XCURSOR_THEME=Oxygen_White XDG_CONFIG_DIRS=/usr/local/kde4/etc/xdg::/etc/xdg:/usr/local/etc/xdg:/usr/local/etc/xdg/xfce4 XDG_CURRENT_DESKTOP=KDE XDG_DATA_DIRS=/usr/local/kde4/share:/usr/local/kde4/share::/usr/share:/usr/local/share:/usr/local/share/gnome _=/usr/bin/env dep_of_deps=0 num_of_deps=0 pbu=/usr/ports/packages/portmaster-backup pd=/usr/ports pdb=/var/db/pkg port_dbdir=/var/db/ports use_pkgng=yes *********************************************** make[3]: illegal argument to -j -- must be positive integer! real 0m0.001s user 0m0.000s sys 0m0.000s *************************************************************** Error building Sage. The following package(s) may have failed to build: tail: /usr/ports/math/sage/work/sage-5.13/logs/pkgs/*.log: No such file or directory The build directory may contain configuration files and other potentially helpful information. WARNING: if you now run 'make' again, the build directory will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. gmake[2]: *** [build] Error 1 gmake[2]: Leaving directory `/usr/ports/math/sage/work/sage-5.13' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make[1]: stopped in /usr/ports/math/sage *** Error code 1 Stop. make: stopped in /usr/ports/math/sage ===>>> make failed for math/sage ===>>> Aborting update >How-To-Repeat: It is the same all the time. >Fix: >Release-Note: >Audit-Trail: >Unformatted: