From owner-svn-ports-head@freebsd.org  Sun Nov  8 16:40:00 2015
Return-Path: <owner-svn-ports-head@freebsd.org>
Delivered-To: svn-ports-head@mailman.ysv.freebsd.org
Received: from mx1.freebsd.org (mx1.freebsd.org
 [IPv6:2001:1900:2254:206a::19:1])
 by mailman.ysv.freebsd.org (Postfix) with ESMTP id 2060CA296C9;
 Sun,  8 Nov 2015 16:40:00 +0000 (UTC) (envelope-from pi@FreeBSD.org)
Received: from repo.freebsd.org (repo.freebsd.org
 [IPv6:2610:1c1:1:6068::e6a:0])
 (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits))
 (Client did not present a certificate)
 by mx1.freebsd.org (Postfix) with ESMTPS id DBAD914CE;
 Sun,  8 Nov 2015 16:39:59 +0000 (UTC) (envelope-from pi@FreeBSD.org)
Received: from repo.freebsd.org ([127.0.1.37])
 by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id tA8GdwDl024285;
 Sun, 8 Nov 2015 16:39:58 GMT (envelope-from pi@FreeBSD.org)
Received: (from pi@localhost)
 by repo.freebsd.org (8.15.2/8.15.2/Submit) id tA8GdwSp024283;
 Sun, 8 Nov 2015 16:39:58 GMT (envelope-from pi@FreeBSD.org)
Message-Id: <201511081639.tA8GdwSp024283@repo.freebsd.org>
X-Authentication-Warning: repo.freebsd.org: pi set sender to pi@FreeBSD.org
 using -f
From: Kurt Jaeger <pi@FreeBSD.org>
Date: Sun, 8 Nov 2015 16:39:58 +0000 (UTC)
To: ports-committers@freebsd.org, svn-ports-all@freebsd.org,
 svn-ports-head@freebsd.org
Subject: svn commit: r401065 - head/biology/seqtools
X-SVN-Group: ports-head
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
X-BeenThere: svn-ports-head@freebsd.org
X-Mailman-Version: 2.1.20
Precedence: list
List-Id: SVN commit messages for the ports tree for head
 <svn-ports-head.freebsd.org>
List-Unsubscribe: <https://lists.freebsd.org/mailman/options/svn-ports-head>, 
 <mailto:svn-ports-head-request@freebsd.org?subject=unsubscribe>
List-Archive: <http://lists.freebsd.org/pipermail/svn-ports-head/>
List-Post: <mailto:svn-ports-head@freebsd.org>
List-Help: <mailto:svn-ports-head-request@freebsd.org?subject=help>
List-Subscribe: <https://lists.freebsd.org/mailman/listinfo/svn-ports-head>,
 <mailto:svn-ports-head-request@freebsd.org?subject=subscribe>
X-List-Received-Date: Sun, 08 Nov 2015 16:40:00 -0000

Author: pi
Date: Sun Nov  8 16:39:58 2015
New Revision: 401065
URL: https://svnweb.freebsd.org/changeset/ports/401065

Log:
  biology/seqtools: 4.36 -> 4.39.0
  
  - Blixem
    o There is now an optional setting to highlight "maybe-canonical"
      splice sites in Blixem. This can be used to help identify
      problems where the strand is incorrect in the input data - it
      highlights splice sites in a different colour if they would be
      canonical were they on the other strand.
    o Fixed a bug with colinearity lines when an alignment's cigar
      string contains introns.
    o There are now separate feedback boxes for the selected sequence
      name coordinates. Hover over each box to see a tooltip describing
      its contents.

Modified:
  head/biology/seqtools/Makefile
  head/biology/seqtools/distinfo

Modified: head/biology/seqtools/Makefile
==============================================================================
--- head/biology/seqtools/Makefile	Sun Nov  8 16:36:07 2015	(r401064)
+++ head/biology/seqtools/Makefile	Sun Nov  8 16:39:58 2015	(r401065)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	seqtools
-PORTVERSION=	4.36
+PORTVERSION=	4.39.0
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
 

Modified: head/biology/seqtools/distinfo
==============================================================================
--- head/biology/seqtools/distinfo	Sun Nov  8 16:36:07 2015	(r401064)
+++ head/biology/seqtools/distinfo	Sun Nov  8 16:39:58 2015	(r401065)
@@ -1,2 +1,2 @@
-SHA256 (seqtools-4.36.tar.gz) = ee64a35ed65a106053c1211c0d3b9d6c4f51536b2a296a35539d1035547f7dbe
-SIZE (seqtools-4.36.tar.gz) = 5594200
+SHA256 (seqtools-4.39.0.tar.gz) = a8f34d72dfaf662a4bf7739f5ffe7f00ead8f97a453ede4bc8387a02a3a5f865
+SIZE (seqtools-4.39.0.tar.gz) = 5601175