Date: Thu, 11 Jul 2019 17:05:22 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r506417 - in head/biology: . libbigwig libbigwig/files Message-ID: <201907111705.x6BH5MrX040552@repo.freebsd.org>
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Author: yuri Date: Thu Jul 11 17:05:22 2019 New Revision: 506417 URL: https://svnweb.freebsd.org/changeset/ports/506417 Log: New port: biology/libbigwig: C library for handling bigWig files (containing genomic data) Added: head/biology/libbigwig/ head/biology/libbigwig/Makefile (contents, props changed) head/biology/libbigwig/distinfo (contents, props changed) head/biology/libbigwig/files/ head/biology/libbigwig/files/patch-Makefile (contents, props changed) head/biology/libbigwig/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Thu Jul 11 16:59:17 2019 (r506416) +++ head/biology/Makefile Thu Jul 11 17:05:22 2019 (r506417) @@ -65,6 +65,7 @@ SUBDIR += kallisto SUBDIR += lagan SUBDIR += lamarc + SUBDIR += libbigwig SUBDIR += libgtextutils SUBDIR += libsbml SUBDIR += linux-foldingathome Added: head/biology/libbigwig/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/libbigwig/Makefile Thu Jul 11 17:05:22 2019 (r506417) @@ -0,0 +1,33 @@ +# $FreeBSD$ + +PORTNAME= libbigwig +DISTVERSION= 0.4.4 +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C library for handling bigWig files (containing genomic data) + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libcurl.so:ftp/curl + +USES= gmake localbase:ldflags +USE_GITHUB= yes +GH_ACCOUNT= dpryan79 +GH_PROJECT= libBigWig +USE_LDCONFIG= yes + +MAKE_ARGS= LDFLAGS=-L${LOCALBASE}/lib + +PLIST_FILES= include/bigWig.h \ + include/bigWigIO.h \ + include/bwCommon.h \ + include/bwValues.h \ + lib/libBigWig.a \ + lib/libBigWig.so + +post-stage: + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libBigWig.so + +.include <bsd.port.mk> Added: head/biology/libbigwig/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/libbigwig/distinfo Thu Jul 11 17:05:22 2019 (r506417) @@ -0,0 +1,3 @@ +TIMESTAMP = 1562863376 +SHA256 (dpryan79-libBigWig-0.4.4_GH0.tar.gz) = 43a2298b2ebadc48103447a3bb4426df1b38d1bec5fa564e50ed2f00cc060478 +SIZE (dpryan79-libBigWig-0.4.4_GH0.tar.gz) = 272926 Added: head/biology/libbigwig/files/patch-Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/libbigwig/files/patch-Makefile Thu Jul 11 17:05:22 2019 (r506417) @@ -0,0 +1,14 @@ +--- Makefile.orig 2019-07-11 16:45:26 UTC ++++ Makefile +@@ -71,7 +71,7 @@ clean: + rm -f *.o libBigWig.a libBigWig.so *.pico test/testLocal test/testRemote test/testWrite test/exampleWrite test/testRemoteManyContigs test/testBigBed test/testIterator example_output.bw + + install: libBigWig.a libBigWig.so +- install -d $(prefix)/lib $(prefix)/include +- install libBigWig.a $(prefix)/lib +- install libBigWig.so $(prefix)/lib +- install *.h $(prefix)/include ++ install -d $(prefix)/lib $(DESTDIR)$(prefix)/include ++ install libBigWig.a $(DESTDIR)$(prefix)/lib ++ install libBigWig.so $(DESTDIR)$(prefix)/lib ++ install *.h $(DESTDIR)$(prefix)/include Added: head/biology/libbigwig/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/libbigwig/pkg-descr Thu Jul 11 17:05:22 2019 (r506417) @@ -0,0 +1,3 @@ +A C library for reading/parsing local and remote bigWig and bigBed files. + +WWW: https://github.com/dpryan79/libBigWig
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