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Date:      Sun, 30 Mar 2014 21:37:40 +0000 (UTC)
From:      Rene Ladan <rene@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r349682 - in head/science/hdf-java: . files
Message-ID:  <201403302137.s2ULbeCL090826@svn.freebsd.org>

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Author: rene
Date: Sun Mar 30 21:37:40 2014
New Revision: 349682
URL: http://svnweb.freebsd.org/changeset/ports/349682
QAT: https://qat.redports.org/buildarchive/r349682/

Log:
  - Undeprecate by updating MASTER_SITES
  - Update to 2.10
  - Stage support
  - Use new LIB_DEPENDS
  - Regenarate pkg-plist with 'make makeplist'

Modified:
  head/science/hdf-java/Makefile
  head/science/hdf-java/distinfo
  head/science/hdf-java/files/patch-Makefile.in
  head/science/hdf-java/files/patch-configure
  head/science/hdf-java/pkg-plist

Modified: head/science/hdf-java/Makefile
==============================================================================
--- head/science/hdf-java/Makefile	Sun Mar 30 21:33:51 2014	(r349681)
+++ head/science/hdf-java/Makefile	Sun Mar 30 21:37:40 2014	(r349682)
@@ -2,20 +2,16 @@
 # $FreeBSD$
 
 PORTNAME=	hdf-java
-PORTVERSION=	2.8
+PORTVERSION=	2.10
 CATEGORIES=	science java
-MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/ \
-		http://www.predatorlabs.net/dl/
-EXTRACT_SUFX=	-src.tar
+MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdf-java-${PORTVERSION}/src/
+DISTNAME=	${PORTNAME}-${PORTVERSION}-source
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Java interface to HDF5
 
-DEPRECATED=	No more public distfiles
-EXPIRATION_DATE=	2014-03-10
-
-LIB_DEPENDS=	hdf5:${PORTSDIR}/science/hdf5-18 \
-		jpeg:${PORTSDIR}/graphics/jpeg
+LIB_DEPENDS=	libhdf5.so:${PORTSDIR}/science/hdf5-18 \
+		libjpeg.so:${PORTSDIR}/graphics/jpeg
 
 USE_JAVA=	yes
 JAVA_VERSION=	1.6+
@@ -26,6 +22,8 @@ USES=		dos2unix gmake
 DOS2UNIX_REGEX=	.*/examples/.*Makefile.in
 
 GNU_CONFIGURE=	yes
+GNU_CONFIGURE_PREFIX=${STAGEDIR}${PREFIX}
+GNU_CONFIGURE_MANPREFIX=${STAGEDIR}${PREFIX}
 CONFIGURE_ARGS=	--with-jdk=${JAVA_HOME}/include,${JAVA_HOME}/jre/lib/ \
 		--with-hdf5=${LOCALBASE}/include \
 		--with-libz=/lib \
@@ -34,12 +32,9 @@ CONFIGURE_ARGS=	--with-jdk=${JAVA_HOME}/
 		--without-h4toh5
 USE_LDCONFIG=	yes
 
-WRKSRC=		${WRKDIR}/${PORTNAME}
-
 OPTIONS_DEFINE=	SZIP DOCS
 SZIP_DESC=	SZIP support (must match with science/hdf5-18)
 
-NO_STAGE=	yes
 .include <bsd.port.options.mk>
 
 .if ${PORT_OPTIONS:MSZIP}
@@ -58,20 +53,24 @@ post-patch:
 		-e 's|$$sz_lib"/libsz."$$LLEXT|"${LOCALBASE}/lib/libsz.so.*"|' \
 		-e 's|LLEXT="a"|LLEXT="so"|g' \
 		-e 's|COPT="-shared"|COPT="-fPIC"|g' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e 's|LIBDIR=$$(JH45INSTALLDIR)|LIBDIR=${PREFIX}|' \
-		-e 's|$$(JH45INSTALLDIR)/lib|${JAVAJARDIR}|g' \
+	@${REINPLACE_CMD} -e 's|$$(JH45INSTALLDIR)/lib|${STAGEDIR}${JAVAJARDIR}|g' \
 		-e 's|INSTALL_LIB |${INSTALL_LIB} |' \
 		-e 's|cp |${INSTALL_DATA} |g' ${WRKSRC}/Makefile.in
-	@${REINPLACE_CMD} -e\
+	@${REINPLACE_CMD} -e \
 		's|$$HDFJAVA"/lib/freebsd:"$$HDFJAVA"/lib/ext|${PREFIX}/lib"|' \
 		-e 's|$$HDFJAVA"/lib|${JAVAJARDIR}"|g' \
 		${WRKSRC}/bin/hdfview.sh.in
 
+post-build:
+	@${REINPLACE_CMD} -e 's|${STAGEDIR}||' ${WRKSRC}/bin/hdfview.sh
+
 post-install:
 .if ${PORT_OPTIONS:MDOCS}
-	@${MKDIR} ${DOCSDIR}/UsersGuide
-	(cd ${WRKSRC}/docs/hdfview/ && ${COPYTREE_SHARE} "UsersGuide" ${DOCSDIR}/)
-	(cd ${WRKSRC}/docs/ && ${COPYTREE_SHARE} "javadocs" ${DOCSDIR}/)
+	@${MKDIR} ${STAGEDIR}${DOCSDIR}/UsersGuide
+	(cd ${WRKSRC}/docs/hdfview/ && ${COPYTREE_SHARE} "UsersGuide" \
+	    ${STAGEDIR}${DOCSDIR}/)
+	(cd ${WRKSRC}/docs/ && ${COPYTREE_SHARE} "javadocs" \
+	    ${STAGEDIR}${DOCSDIR}/)
 .endif
 
 regression-test: build

Modified: head/science/hdf-java/distinfo
==============================================================================
--- head/science/hdf-java/distinfo	Sun Mar 30 21:33:51 2014	(r349681)
+++ head/science/hdf-java/distinfo	Sun Mar 30 21:37:40 2014	(r349682)
@@ -1,2 +1,2 @@
-SHA256 (hdf-java-2.8-src.tar) = bc1b1eb2b9e40c2a23aff295818526ba007cdf8d43bb9a3d1cb117304b56fbb5
-SIZE (hdf-java-2.8-src.tar) = 13670400
+SHA256 (hdf-java-2.10-source.tar.gz) = 606b6da1b6b8655b6755681fc4716244bcf476aa6fe8aabe81a2d38cb5c1b5da
+SIZE (hdf-java-2.10-source.tar.gz) = 41428524

Modified: head/science/hdf-java/files/patch-Makefile.in
==============================================================================
--- head/science/hdf-java/files/patch-Makefile.in	Sun Mar 30 21:33:51 2014	(r349681)
+++ head/science/hdf-java/files/patch-Makefile.in	Sun Mar 30 21:37:40 2014	(r349682)
@@ -1,35 +1,33 @@
---- ./Makefile.in.orig	2011-11-29 12:19:58.000000000 -0800
-+++ ./Makefile.in	2011-12-21 15:03:05.000000000 -0800
-@@ -283,18 +283,8 @@
+--- Makefile.in.orig	2013-10-24 20:11:53.000000000 +0200
++++ Makefile.in	2014-03-30 23:19:44.000000000 +0200
+@@ -286,16 +286,8 @@
  uninstall: uninstall-jhdfview uninstall-jhdfobj uninstall-lib uninstall-jhi uninstall-jhi5 
  
  install-lib: natives
 -	-mkdir -p $(LIBDIR);
 -	-mkdir -p $(LIBDIR)/@JAVATARG@
- 	@if test -n "$(H5INC)" ; then \
--	cp $(CLASS_DIR)/@JAVATARG@/libjhdf5.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
--	@if test -n "$(H5INC)/../lib" ; then \
+ 	@if test x'$(H5INC)' != x'' ; then \
+-	cp $(CLASS_DIR)/@JAVATARG@/libjhdf5.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ;  \
 -	cp $(H5INC)/../lib/*.settings $(LIBDIR)/@JAVATARG@ ; fi
--	@if test -n "$(H4INC)" ; then \
--	cp $(CLASS_DIR)/@JAVATARG@/libjhdf.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
--	@if test -n "$(H4INC)/../lib" ; then \
+-	@if test x'$(H4INC)' != x'' ; then \
+-	cp $(CLASS_DIR)/@JAVATARG@/libjhdf.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ;  \
 -	cp $(H4INC)/../lib/*.settings $(LIBDIR)/@JAVATARG@ ; fi
--	@if test -n "$(H45INC)" ; then \
+-	@if test x'$(H45INC)' != x'' ; then \
 -	cp $(CLASS_DIR)/@JAVATARG@/libjh4toh5.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
 +	INSTALL_LIB $(CLASS_DIR)/@JAVATARG@/libjhdf5.$(JSLEXT) $(LIBDIR)/ ; fi
  	@echo "Install Natives complete"
  
  install-hdflib: 
-@@ -325,7 +315,6 @@
- 	@if test -n "$(H4INC)" ; then $(MAKE) do-install-jhdf ; fi
+@@ -326,7 +318,6 @@
+ 	@if test x'$(H4INC)' != x'' ; then $(MAKE) do-install-jhdf ; fi
  
  do-install-jhdf: jhdf-packages
 -	-mkdir -p $(LIBDIR);
  	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdf.jar -C $(CLASS_DIR) $(JHICLASSES)
  	@echo "Install JHI complete"
  
-@@ -333,42 +322,30 @@
- 	@if test -n "$(H5INC)" ; then $(MAKE) do-install-jhdf5 ; fi
+@@ -334,42 +325,30 @@
+ 	@if test x'$(H5INC)' != x'' ; then $(MAKE) do-install-jhdf5 ; fi
  
  do-install-jhdf5: jhdf5-packages
 -	-mkdir -p $(LIBDIR);
@@ -39,8 +37,8 @@
  install-jhdfobj: ncsa.hdf.object
 -	-mkdir -p $(LIBDIR);
  	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdfobj.jar -C $(CLASS_DIR) $(HDFOBJCLASSES)
- 	@if test -n "$(H4INC)" ; then $(MAKE) do-install-jhdf4obj ; fi
- 	@if test -n "$(H5INC)" ; then $(MAKE) do-install-jhdf5obj ; fi
+ 	@if test x'$(H4INC)' != x'' ; then $(MAKE) do-install-jhdf4obj ; fi
+ 	@if test x'$(H5INC)' != x'' ; then $(MAKE) do-install-jhdf5obj ; fi
  	@echo "Install HDFOBJ complete"
  
  do-install-jhdf4obj: ncsa.hdf.object.h4
@@ -71,6 +69,6 @@
 -	cp lib/junit.jar $(LIBDIR)
 +	cp lib/netcdf.jar $(JH45INSTALLDIR)/lib
 +	cp lib/fits.jar $(JH45INSTALLDIR)/lib
+ 	cp lib/slf4j-api-1.7.5.jar $(LIBDIR)
+ 	cp lib/ext/slf4j-nop-1.7.5.jar $(LIBDIR)
  	cp bin/hdfview.sh $(BINDIR)
- 	chmod a+x $(BINDIR)/hdfview.sh
- 	@echo "Install HDFVIEW complete"

Modified: head/science/hdf-java/files/patch-configure
==============================================================================
--- head/science/hdf-java/files/patch-configure	Sun Mar 30 21:33:51 2014	(r349681)
+++ head/science/hdf-java/files/patch-configure	Sun Mar 30 21:37:40 2014	(r349682)
@@ -1,26 +1,25 @@
---- ./configure.orig	2011-12-21 15:16:44.000000000 -0800
-+++ ./configure	2011-12-21 15:18:28.000000000 -0800
-@@ -4424,12 +4424,6 @@
-   if test \( ! -d "$JH45INST" \); then
-     JH45INST_FOUND=0
+--- configure.orig	2012-05-15 15:51:26.000000000 +0200
++++ configure	2014-03-30 22:57:58.000000000 +0200
+@@ -4620,13 +4620,6 @@
+   if test -z "$JH45INST" ; then
+     JH45INST=$ac_cv_lib_JH45INST;
    fi
+-  if test \( ! -d "$JH45INST" \); then
+-    JH45INST_FOUND=0
+-  fi
 -  if test \( ! -w "$JH45INST" \); then
--    { { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
--echo "$as_me: error:  $JAVINST : not writable " >&2;}
--   { (exit 1); exit 1; }; }
+-    as_fn_error $? " $JH45INST : not writable " "$LINENO" 5
 -    JH45INST_FOUND=0
 -  fi
  fi
  until test $JH45INST_FOUND -eq 1; do
    echo "Please type the directory in which to install the JH45"
-@@ -4438,12 +4432,6 @@
+@@ -4635,10 +4628,6 @@
    if test \( ! -d "$JH45INST" \); then
      JH45INST_FOUND=0
    fi
 -  if test \( ! -w "$JH45INST" \); then
--    { { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
--echo "$as_me: error:  $JAVINST : not writable " >&2;}
--   { (exit 1); exit 1; }; }
+-    as_fn_error $? " $JH45INST : not writable " "$LINENO" 5
 -    JH45INST_FOUND=0
 -  fi
  done

Modified: head/science/hdf-java/pkg-plist
==============================================================================
--- head/science/hdf-java/pkg-plist	Sun Mar 30 21:33:51 2014	(r349681)
+++ head/science/hdf-java/pkg-plist	Sun Mar 30 21:37:40 2014	(r349682)
@@ -1,15 +1,23 @@
 bin/hdfview.sh
-lib/libjhdf5.so
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/RELEASE.txt
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/Thumbs.db
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/bitmask_and.png
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/bitmask_extract.png
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/bitmask_options.png
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/change_target.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/chart_histogram.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/chart_line.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/class_diagram_object.jpg
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/data_pointed_by_ref.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_2d.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_3d.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_compound.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_compound_2d.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_object_references.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_open_as.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_region_ref.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_reorder.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_compound.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_example1.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_example2.gif
@@ -48,12 +56,18 @@ lib/libjhdf5.so
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_attribute.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_dataset.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_file.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_group.png
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_group_options.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_image.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_link.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_attribute.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_general_dataset.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_general_group.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_userblock.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/question.png
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/save_as_binary.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/save_as_text.gif
+%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/set_libversionbounds.png
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/tree_view.gif
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/index.html
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug01introduction.html
@@ -63,32 +77,18 @@ lib/libjhdf5.so
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug05spreadsheet.html
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug06imageview.html
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug07textview.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFArray.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFChunkInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFConstants.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFDeflateCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFDeprecated.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFException.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFIMCOMPCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFJavaException.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFJPEGCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFLibrary.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFLibraryException.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNativeData.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNBITChunkInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNBITCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNewCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNotImplementedException.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFOldCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFOldRLECompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFRLECompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFSKPHUFFCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFSZIPCompInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFTable.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-frame.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-summary.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/allclasses-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/allclasses-noframe.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/constant-values.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/deprecated-list.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/help-doc.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/index-all.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/index.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/H5.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDF5Constants.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDF5GroupInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDFArray.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDFNativeData.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/Callbacks.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_cb.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_t.html
@@ -96,16 +96,29 @@ lib/libjhdf5.so
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5L_iterate_t.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_cb.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/Callbacks.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5D_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5D_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5L_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5L_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5O_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use/H5O_iterate_t.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-frame.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-summary.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-use.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use/H5.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use/HDF5Constants.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use/HDF5GroupInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use/HDFArray.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use/HDFNativeData.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AtomException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AttributeException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5BtreeException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataFiltersException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataStorageException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.html
-%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataStorageException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5Exception.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.html
@@ -123,27 +136,106 @@ lib/libjhdf5.so
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ReferenceException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.html
 %%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5SymbolTableException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5AtomException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5AttributeException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use/HDF5BtreeException.html
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