From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Nov 13 08:10:09 2010 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id ACD17106564A for ; Sat, 13 Nov 2010 08:10:09 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 7165C8FC20 for ; Sat, 13 Nov 2010 08:10:09 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.4/8.14.4) with ESMTP id oAD8A9c5017116 for ; Sat, 13 Nov 2010 08:10:09 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.4/8.14.4/Submit) id oAD8A9UY017115; Sat, 13 Nov 2010 08:10:09 GMT (envelope-from gnats) Resent-Date: Sat, 13 Nov 2010 08:10:09 GMT Resent-Message-Id: <201011130810.oAD8A9UY017115@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Gea-Suan Lin Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 07E0B106566B; Sat, 13 Nov 2010 08:00:18 +0000 (UTC) (envelope-from gslin@colo-p.gslin.org) Received: from colo-p.gslin.org (97.135.ip.mwsrv.com [210.242.135.97]) by mx1.freebsd.org (Postfix) with ESMTP id 55EF28FC16; Sat, 13 Nov 2010 08:00:16 +0000 (UTC) Received: by colo-p.gslin.org (Postfix, from userid 1000) id D0D9E7E822; Sat, 13 Nov 2010 16:00:15 +0800 (CST) Message-Id: <20101113080015.D0D9E7E822@colo-p.gslin.org> Date: Sat, 13 Nov 2010 16:00:15 +0800 (CST) From: Gea-Suan Lin To: FreeBSD-gnats-submit@FreeBSD.org X-Send-Pr-Version: 3.113 Cc: perl@FreeBSD.org, gslin@gslin.org Subject: ports/152189: [PATCH] biology/p5-Bio-Graphics: update to 2.15 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 13 Nov 2010 08:10:09 -0000 >Number: 152189 >Category: ports >Synopsis: [PATCH] biology/p5-Bio-Graphics: update to 2.15 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Sat Nov 13 08:10:08 UTC 2010 >Closed-Date: >Last-Modified: >Originator: Gea-Suan Lin >Release: FreeBSD 7.3-RELEASE-p2 i386 >Organization: >Environment: System: FreeBSD colo-p.gslin.org 7.3-RELEASE-p2 FreeBSD 7.3-RELEASE-p2 #0: Mon Jul 12 19:04:04 UTC 2010 >Description: - Update to 2.15 Port maintainer (perl@FreeBSD.org) is cc'd. Generated with FreeBSD Port Tools 0.99 >How-To-Repeat: >Fix: --- p5-Bio-Graphics-2.15.patch begins here --- diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Graphics/Makefile /home/staff/gslin/work/ports/p5-Bio-Graphics/Makefile --- /usr/ports/biology/p5-Bio-Graphics/Makefile 2010-10-19 18:42:43.000000000 +0800 +++ /home/staff/gslin/work/ports/p5-Bio-Graphics/Makefile 2010-11-13 15:59:57.000000000 +0800 @@ -6,120 +6,121 @@ # PORTNAME= Bio-Graphics -PORTVERSION= 2.14 +PORTVERSION= 2.15 CATEGORIES= biology perl5 MASTER_SITES= CPAN -MASTER_SITE_SUBDIR= ../../authors/id/L/LD/LDS PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Generate GD Images of Bio::Seq Objects -BUILD_DEPENDS= p5-GD>=2.3:${PORTSDIR}/graphics/p5-GD \ +RUN_DEPENDS= p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF \ + p5-GD>=2.3:${PORTSDIR}/graphics/p5-GD \ p5-GD-SVG>=0.32:${PORTSDIR}/graphics/p5-GD-SVG \ p5-Statistics-Descriptive>=2.6:${PORTSDIR}/math/p5-Statistics-Descriptive \ - p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl \ - p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF -RUN_DEPENDS= ${BUILD_DEPENDS} + p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl PERL_MODBUILD= YES -MAN1= contig_draw.pl.1 feature_draw.pl.1 \ - frend.pl.1 search_overview.pl.1 - -MAN3= Bio::Graphics.3 \ - Bio::Graphics::Glyph::transcript2.3 \ - Bio::Graphics::Glyph::extending_arrow.3 \ - Bio::Graphics::Wiggle.3 \ - Bio::Graphics::ConfiguratorI.3 \ - Bio::Graphics::DrawTransmembrane.3 \ - Bio::Graphics::Feature.3 \ - Bio::Graphics::FeatureBase.3 \ - Bio::Graphics::FeatureDir.3 \ - Bio::Graphics::FeatureFile.3 \ - Bio::Graphics::FeatureFile::Iterator.3 \ - Bio::Graphics::Glyph.3 \ - Bio::Graphics::Glyph::Factory.3 \ - Bio::Graphics::Glyph::alignment.3 \ - Bio::Graphics::Glyph::allele_tower.3 \ - Bio::Graphics::Glyph::anchored_arrow.3 \ - Bio::Graphics::Glyph::arrow.3 \ - Bio::Graphics::Glyph::box.3 \ - Bio::Graphics::Glyph::broken_line.3 \ - Bio::Graphics::Glyph::cds.3 \ - Bio::Graphics::Glyph::christmas_arrow.3 \ - Bio::Graphics::Glyph::crossbox.3 \ - Bio::Graphics::Glyph::dashed_line.3 \ - Bio::Graphics::Glyph::diamond.3 \ - Bio::Graphics::Glyph::dna.3 \ - Bio::Graphics::Glyph::dot.3 \ - Bio::Graphics::Glyph::dumbbell.3 \ - Bio::Graphics::Glyph::ellipse.3 \ - Bio::Graphics::Glyph::ex.3 \ - Bio::Graphics::Glyph::fixedwidth.3 \ - Bio::Graphics::Glyph::flag.3 \ - Bio::Graphics::Glyph::gene.3 \ - Bio::Graphics::Glyph::generic.3 \ - Bio::Graphics::Glyph::graded_segments.3 \ - Bio::Graphics::Glyph::group.3 \ - Bio::Graphics::Glyph::hat.3 \ - Bio::Graphics::Glyph::heat_map.3 \ - Bio::Graphics::Glyph::heat_map_ideogram.3 \ - Bio::Graphics::Glyph::heterogeneous_segments.3 \ - Bio::Graphics::Glyph::hidden.3 \ - Bio::Graphics::Glyph::hybrid_plot.3 \ - Bio::Graphics::Glyph::ideogram.3 \ - Bio::Graphics::Glyph::image.3 \ - Bio::Graphics::Glyph::lightning.3 \ - Bio::Graphics::Glyph::line.3 \ - Bio::Graphics::Glyph::merge_parts.3 \ - Bio::Graphics::Glyph::merged_alignment.3 \ - Bio::Graphics::Glyph::minmax.3 \ - Bio::Graphics::Glyph::oval.3 \ - Bio::Graphics::Glyph::pentagram.3 \ - Bio::Graphics::Glyph::pairplot.3 \ - Bio::Graphics::Glyph::phylo_align.3 \ - Bio::Graphics::Glyph::pinsertion.3 \ - Bio::Graphics::Glyph::primers.3 \ - Bio::Graphics::Glyph::processed_transcript.3 \ - Bio::Graphics::Glyph::protein.3 \ - Bio::Graphics::Glyph::ragged_ends.3 \ - Bio::Graphics::Glyph::rainbow_gene.3 \ - Bio::Graphics::Glyph::redgreen_box.3 \ - Bio::Graphics::Glyph::redgreen_segment.3 \ - Bio::Graphics::Glyph::repeating_shape.3 \ - Bio::Graphics::Glyph::rndrect.3 \ - Bio::Graphics::Glyph::ruler_arrow.3 \ - Bio::Graphics::Glyph::saw_teeth.3 \ - Bio::Graphics::Glyph::segmented_keyglyph.3 \ - Bio::Graphics::Glyph::segments.3 \ - Bio::Graphics::Glyph::so_transcript.3 \ - Bio::Graphics::Glyph::span.3 \ - Bio::Graphics::Glyph::spectrogram.3 \ - Bio::Graphics::Glyph::splice_site.3 \ - Bio::Graphics::Glyph::stackedplot.3 \ - Bio::Graphics::Glyph::ternary_plot.3 \ - Bio::Graphics::Glyph::text_in_box.3 \ - Bio::Graphics::Glyph::three_letters.3 \ - Bio::Graphics::Glyph::tic_tac_toe.3 \ - Bio::Graphics::Glyph::toomany.3 \ - Bio::Graphics::Glyph::trace.3 \ - Bio::Graphics::Glyph::track.3 \ - Bio::Graphics::Glyph::transcript.3 \ - Bio::Graphics::Glyph::translation.3 \ - Bio::Graphics::Glyph::triangle.3 \ - Bio::Graphics::Glyph::two_bolts.3 \ - Bio::Graphics::Glyph::wave.3 \ - Bio::Graphics::Glyph::weighted_arrow.3 \ - Bio::Graphics::Glyph::whiskerplot.3 \ - Bio::Graphics::Glyph::wiggle_box.3 \ - Bio::Graphics::Glyph::wiggle_density.3 \ - Bio::Graphics::Glyph::wiggle_xyplot.3 \ - Bio::Graphics::Glyph::xyplot.3 \ - Bio::Graphics::Panel.3 \ - Bio::Graphics::Pictogram.3 \ - Bio::Graphics::RendererI.3 \ - Bio::Graphics::Util.3 \ - Bio::Graphics::Wiggle::Loader.3 +MAN1= contig_draw.pl.1 \ + feature_draw.pl.1 \ + frend.pl.1 \ + search_overview.pl.1 + +MAN3= Bio::Graphics.3 \ + Bio::Graphics::Glyph::transcript2.3 \ + Bio::Graphics::Glyph::extending_arrow.3 \ + Bio::Graphics::Wiggle.3 \ + Bio::Graphics::ConfiguratorI.3 \ + Bio::Graphics::DrawTransmembrane.3 \ + Bio::Graphics::Feature.3 \ + Bio::Graphics::FeatureBase.3 \ + Bio::Graphics::FeatureDir.3 \ + Bio::Graphics::FeatureFile.3 \ + Bio::Graphics::FeatureFile::Iterator.3 \ + Bio::Graphics::Glyph.3 \ + Bio::Graphics::Glyph::Factory.3 \ + Bio::Graphics::Glyph::alignment.3 \ + Bio::Graphics::Glyph::allele_tower.3 \ + Bio::Graphics::Glyph::anchored_arrow.3 \ + Bio::Graphics::Glyph::arrow.3 \ + Bio::Graphics::Glyph::box.3 \ + Bio::Graphics::Glyph::broken_line.3 \ + Bio::Graphics::Glyph::cds.3 \ + Bio::Graphics::Glyph::christmas_arrow.3 \ + Bio::Graphics::Glyph::crossbox.3 \ + Bio::Graphics::Glyph::dashed_line.3 \ + Bio::Graphics::Glyph::diamond.3 \ + Bio::Graphics::Glyph::dna.3 \ + Bio::Graphics::Glyph::dot.3 \ + Bio::Graphics::Glyph::dumbbell.3 \ + Bio::Graphics::Glyph::ellipse.3 \ + Bio::Graphics::Glyph::ex.3 \ + Bio::Graphics::Glyph::fixedwidth.3 \ + Bio::Graphics::Glyph::flag.3 \ + Bio::Graphics::Glyph::gene.3 \ + Bio::Graphics::Glyph::generic.3 \ + Bio::Graphics::Glyph::graded_segments.3 \ + Bio::Graphics::Glyph::group.3 \ + Bio::Graphics::Glyph::hat.3 \ + Bio::Graphics::Glyph::heat_map.3 \ + Bio::Graphics::Glyph::heat_map_ideogram.3 \ + Bio::Graphics::Glyph::heterogeneous_segments.3 \ + Bio::Graphics::Glyph::hidden.3 \ + Bio::Graphics::Glyph::hybrid_plot.3 \ + Bio::Graphics::Glyph::ideogram.3 \ + Bio::Graphics::Glyph::image.3 \ + Bio::Graphics::Glyph::lightning.3 \ + Bio::Graphics::Glyph::line.3 \ + Bio::Graphics::Glyph::merge_parts.3 \ + Bio::Graphics::Glyph::merged_alignment.3 \ + Bio::Graphics::Glyph::minmax.3 \ + Bio::Graphics::Glyph::oval.3 \ + Bio::Graphics::Glyph::pairplot.3 \ + Bio::Graphics::Glyph::pentagram.3 \ + Bio::Graphics::Glyph::phylo_align.3 \ + Bio::Graphics::Glyph::pinsertion.3 \ + Bio::Graphics::Glyph::primers.3 \ + Bio::Graphics::Glyph::processed_transcript.3 \ + Bio::Graphics::Glyph::protein.3 \ + Bio::Graphics::Glyph::ragged_ends.3 \ + Bio::Graphics::Glyph::rainbow_gene.3 \ + Bio::Graphics::Glyph::redgreen_box.3 \ + Bio::Graphics::Glyph::redgreen_segment.3 \ + Bio::Graphics::Glyph::repeating_shape.3 \ + Bio::Graphics::Glyph::rndrect.3 \ + Bio::Graphics::Glyph::ruler_arrow.3 \ + Bio::Graphics::Glyph::saw_teeth.3 \ + Bio::Graphics::Glyph::segmented_keyglyph.3 \ + Bio::Graphics::Glyph::segments.3 \ + Bio::Graphics::Glyph::so_transcript.3 \ + Bio::Graphics::Glyph::span.3 \ + Bio::Graphics::Glyph::spectrogram.3 \ + Bio::Graphics::Glyph::splice_site.3 \ + Bio::Graphics::Glyph::stackedplot.3 \ + Bio::Graphics::Glyph::ternary_plot.3 \ + Bio::Graphics::Glyph::text_in_box.3 \ + Bio::Graphics::Glyph::three_letters.3 \ + Bio::Graphics::Glyph::tic_tac_toe.3 \ + Bio::Graphics::Glyph::toomany.3 \ + Bio::Graphics::Glyph::trace.3 \ + Bio::Graphics::Glyph::track.3 \ + Bio::Graphics::Glyph::transcript.3 \ + Bio::Graphics::Glyph::translation.3 \ + Bio::Graphics::Glyph::triangle.3 \ + Bio::Graphics::Glyph::two_bolts.3 \ + Bio::Graphics::Glyph::vista_plot.3 \ + Bio::Graphics::Glyph::wave.3 \ + Bio::Graphics::Glyph::weighted_arrow.3 \ + Bio::Graphics::Glyph::whiskerplot.3 \ + Bio::Graphics::Glyph::wiggle_box.3 \ + Bio::Graphics::Glyph::wiggle_density.3 \ + Bio::Graphics::Glyph::wiggle_xyplot.3 \ + Bio::Graphics::Glyph::xyplot.3 \ + Bio::Graphics::Panel.3 \ + Bio::Graphics::Pictogram.3 \ + Bio::Graphics::RendererI.3 \ + Bio::Graphics::Util.3 \ + Bio::Graphics::Wiggle::Loader.3 .include diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Graphics/distinfo /home/staff/gslin/work/ports/p5-Bio-Graphics/distinfo --- /usr/ports/biology/p5-Bio-Graphics/distinfo 2010-10-19 18:42:43.000000000 +0800 +++ /home/staff/gslin/work/ports/p5-Bio-Graphics/distinfo 2010-11-13 15:52:37.000000000 +0800 @@ -1,3 +1,2 @@ -MD5 (Bio-Graphics-2.14.tar.gz) = 8a19807fb3f5c91551066956c17cd933 -SHA256 (Bio-Graphics-2.14.tar.gz) = 78ce70c48ac72ba12d694a1c0e57ff4ef2a2b9d477f828586f4430013acd5d62 -SIZE (Bio-Graphics-2.14.tar.gz) = 780551 +SHA256 (Bio-Graphics-2.15.tar.gz) = bee91112c1e8be1f90215d5d965077fc0c8c8fd3a24da4f28a270fa337266376 +SIZE (Bio-Graphics-2.15.tar.gz) = 856073 diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Graphics/pkg-plist /home/staff/gslin/work/ports/p5-Bio-Graphics/pkg-plist --- /usr/ports/biology/p5-Bio-Graphics/pkg-plist 2010-09-26 16:32:26.000000000 +0800 +++ /home/staff/gslin/work/ports/p5-Bio-Graphics/pkg-plist 2010-11-13 15:58:18.000000000 +0800 @@ -1,108 +1,113 @@ -bin/glyph_help.pl -bin/contig_draw.pl -bin/feature_draw.pl -bin/frend.pl -bin/render_msa.pl -bin/search_overview.pl -%%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_density.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_whiskers.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ternary_plot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_minmax.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_xyplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm -%%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm +@comment $FreeBSD$ +%%SITE_PERL%%/Bio/Graphics.pm +%%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm +%%SITE_PERL%%/Bio/Graphics/Feature.pm %%SITE_PERL%%/Bio/Graphics/FeatureBase.pm %%SITE_PERL%%/Bio/Graphics/FeatureDir.pm -%%SITE_PERL%%/Bio/Graphics/RendererI.pm -%%SITE_PERL%%/Bio/Graphics/Util.pm -%%SITE_PERL%%/Bio/Graphics/Pictogram.pm -%%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile.pm -%%SITE_PERL%%/Bio/Graphics/Feature.pm -%%SITE_PERL%%/Bio/Graphics/Panel.pm +%%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm %%SITE_PERL%%/Bio/Graphics/Glyph.pm -%%SITE_PERL%%/Bio/Graphics.pm -%%SITE_PERL%%/Bio/Graphics/Wiggle.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/track.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/saw_teeth.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pentagram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/image.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/allele_tower.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/anchored_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/broken_line.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm %%SITE_PERL%%/Bio/Graphics/Glyph/cds.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/protein.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/repeating_shape.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/merge_parts.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/weighted_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/splice_site.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wave.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/xyplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ragged_ends.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm %%SITE_PERL%%/Bio/Graphics/Glyph/crossbox.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/lightning.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/merged_alignment.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ruler_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/rndrect.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/span.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pinsertion.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/two_bolts.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/primers.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/dashed_line.pm %%SITE_PERL%%/Bio/Graphics/Glyph/diamond.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dna.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/dot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dumbbell.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/minmax.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/whiskerplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/triangle.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/transcript2.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/text_in_box.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm %%SITE_PERL%%/Bio/Graphics/Glyph/group.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/translation.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/line.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heterogeneous_segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm 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