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Date:      Sun, 10 Sep 2006 22:44:27 -0500
From:      Matt Hartzell <mchartzell@getdts.com>
To:        e.stewart@mac.com
Cc:        FreeBSD-Database <freebsd-database@freebsd.org>
Subject:   Re: MySQL: show status problem.
Message-ID:  <4504DB9B.4040602@getdts.com>
In-Reply-To: <6F086B1A-D1BB-4A25-8D60-A9684FBC4C5E@mac.com>
References:  <6F086B1A-D1BB-4A25-8D60-A9684FBC4C5E@mac.com>

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Is there a my.cnf in /usr/local/mysql ? How about a .my.cnf in your home 
directory?

Have you looked into the order that mysql processes the different config 
files locations?

e.stewart@mac.com wrote:
> I've recently installed MySQL 5.0.24 on my FreeBSD by building mysql 
> from the ports directory.
>
> It installed fine and I initialized mysql and secured up the root 
> passwords.
>
> Because mysql is using /var/db/mysql as it's default data directory 
> (and I wanted to use /usr/local/mysql instead), I moved the 
> /var/db/mysql directory to /usr/local/mysql and then added the 
> mysql_dbdir="/usr/local/mysql/" to the rc.conf file under 
> mysql_enable="YES".
>
> Everything seem was working fine. I can log in and use mysql.
>
> I then copied one of the example mysql configuration files to 
> /usr/local/etc/my.cnf and then restarted mysql. MySQL starts up just 
> fine but I can't run the "SHOW STATUS" command. It just sits there and 
> acts like its doing something but never does.
>
> I know the problem is related to my my.cnf file because when I run 
> mysql without that configuration file, show status works just fine.
>
> Below is the contents of my configuration file, any idea what might be 
> screwing this up?
>
> #BEGIN CONFIG INFO
> #DESCR: 4GB RAM, InnoDB only, ACID, few connections, heavy queries
> #TYPE: SYSTEM
> #END CONFIG INFO
>
> #
> # This is a MySQL example config file for systems with 4GB of memory
> # running mostly MySQL using InnoDB only tables and performing complex
> # queries with few connections.
> #
> # You can copy this file to /etc/my.cnf to set global options,
> # mysql-data-dir/my.cnf to set server-specific options
> # (/var/db/mysql for this installation) or to
> # ~/.my.cnf to set user-specific options.
> #
> # In this file, you can use all long options that a program supports.
> # If you want to know which options a program supports, run the program
> # with the "--help" option.
> #
> # More detailed information about the individual options can also be
> # found in the manual.
> #
>
> #
> # The following options will be read by MySQL client applications.
> # Note that only client applications shipped by MySQL are guaranteed
> # to read this section. If you want your own MySQL client program to
> # honor these values, you need to specify it as an option during the
> # MySQL client library initialization.
> #
> [client]
> #password = [your_password]
> #port = 3306
> #socket = /tmp/mysql.sock
>
> # *** Application-specific options follow here ***
>
> #
> # The MySQL server
> #
> [mysqld]
>
> # generic configuration options
> #port = 3306
> #socket = /tmp/mysql.sock
>
> # back_log is the number of connections the operating system can keep in
> # the listen queue, before the MySQL connection manager thread has
> # processed them. If you have a very high connection rate and experience
> # "connection refused" errors, you might need to increase this value.
> # Check your OS documentation for the maximum value of this parameter.
> # Attempting to set back_log higher than your operating system limit
> # will have no effect.
> back_log = 50
>
> # Don't listen on a TCP/IP port at all. This can be a security
> # enhancement, if all processes that need to connect to mysqld run
> # on the same host. All interaction with mysqld must be made via Unix
> # sockets or named pipes.
> # Note that using this option without enabling named pipes on Windows
> # (via the "enable-named-pipe" option) will render mysqld useless!
> #skip-networking
>
> # The maximum amount of concurrent sessions the MySQL server will
> # allow. One of these connections will be reserved for a user with
> # SUPER privileges to allow the administrator to login even if the
> # connection limit has been reached.
> max_connections = 100
>
> # Maximum amount of errors allowed per host. If this limit is reached,
> # the host will be blocked from connecting to the MySQL server until
> # "FLUSH HOSTS" has been run or the server was restarted. Invalid
> # passwords and other errors during the connect phase result in
> # increasing this value. See the "Aborted_connects" status variable for
> # global counter.
> max_connect_errors = 10
>
> # The number of open tables for all threads. Increasing this value
> # increases the number of file descriptors that mysqld requires.
> # Therefore you have to make sure to set the amount of open files
> # allowed to at least 4096 in the variable "open-files-limit" in
> # section [mysqld_safe]
> table_cache = 2048
>
> # Enable external file level locking. Enabled file locking will have a
> # negative impact on performance, so only use it in case you have
> # multiple database instances running on the same files (note some
> # restrictions still apply!) or if you use other software relying on
> # locking MyISAM tables on file level.
> #external-locking
>
> # The maximum size of a query packet the server can handle as well as
> # maximum query size server can process (Important when working with
> # large BLOBs). enlarged dynamically, for each connection.
> max_allowed_packet = 16M
>
> # The size of the cache to hold the SQL statements for the binary log
> # during a transaction. If you often use big, multi-statement
> # transactions you can increase this value to get more performance. All
> # statements from transactions are buffered in the binary log cache and
> # are being written to the binary log at once after the COMMIT. If the
> # transaction is larger than this value, temporary file on disk is used
> # instead. This buffer is allocated per connection on first update
> # statement in transaction
> binlog_cache_size = 1M
>
> # Maximum allowed size for a single HEAP (in memory) table. This option
> # is a protection against the accidential creation of a very large HEAP
> # table which could otherwise use up all memory resources.
> max_heap_table_size = 64M
>
> # Sort buffer is used to perform sorts for some ORDER BY and GROUP BY
> # queries. If sorted data does not fit into the sort buffer, a disk
> # based merge sort is used instead - See the "Sort_merge_passes"
> # status variable. Allocated per thread if sort is needed.
> sort_buffer_size = 8M
>
> # This buffer is used for the optimization of full JOINs (JOINs without
> # indexes). Such JOINs are very bad for performance in most cases
> # anyway, but setting this variable to a large value reduces the
> # performance impact. See the "Select_full_join" status variable for a
> # count of full JOINs. Allocated per thread if full join is found
> join_buffer_size = 8M
>
> # How many threads we should keep in a cache for reuse. When a client
> # disconnects, the client's threads are put in the cache if there aren't
> # more than thread_cache_size threads from before. This greatly reduces
> # the amount of thread creations needed if you have a lot of new
> # connections. (Normally this doesn't give a notable performance
> # improvement if you have a good thread implementation.)
> thread_cache_size = 8
>
> # This permits the application to give the threads system a hint for the
> # desired number of threads that should be run at the same time. This
> # value only makes sense on systems that support the thread_concurrency()
> # function call (Sun Solaris, for example).
> # You should try [number of CPUs]*(2..4) for thread_concurrency
> thread_concurrency = 8
>
> # Query cache is used to cache SELECT results and later return them
> # without actual executing the same query once again. Having the query
> # cache enabled may result in significant speed improvements, if your
> # have a lot of identical queries and rarely changing tables. See the
> # "Qcache_lowmem_prunes" status variable to check if the current value
> # is high enough for your load.
> # Note: In case your tables change very often or if your queries are
> # textually different every time, the query cache may result in a
> # slowdown instead of a performance improvement.
> query_cache_size = 64M
>
> # Only cache result sets that are smaller than this limit. This is to
> # protect the query cache of a very large result set overwriting all
> # other query results.
> query_cache_limit = 2M
>
> # Minimum word length to be indexed by the full text search index.
> # You might wish to decrease it if you need to search for shorter words.
> # Note that you need to rebuild your FULLTEXT index, after you have
> # modified this value.
> ft_min_word_len = 4
>
> # If your system supports the memlock() function call, you might want to
> # enable this option while running MySQL to keep it locked in memory and
> # to avoid potential swapping out in case of high memory pressure. Good
> # for performance.
> #memlock
>
> # Table type which is used by default when creating new tables, if not
> # specified differently during the CREATE TABLE statement.
> default_table_type = MYISAM
>
> # Thread stack size to use. This amount of memory is always reserved at
> # connection time. MySQL itself usually needs no more than 64K of
> # memory, while if you use your own stack hungry UDF functions or your
> # OS requires more stack for some operations, you might need to set this
> # to a higher value.
> thread_stack = 192K
>
> # Set the default transaction isolation level. Levels available are:
> # READ-UNCOMMITTED, READ-COMMITTED, REPEATABLE-READ, SERIALIZABLE
> transaction_isolation = REPEATABLE-READ
>
> # Maximum size for internal (in-memory) temporary tables. If a table
> # grows larger than this value, it is automatically converted to disk
> # based table This limitation is for a single table. There can be many
> # of them.
> tmp_table_size = 64M
>
> # Enable binary logging. This is required for acting as a MASTER in a
> # replication configuration. You also need the binary log if you need
> # the ability to do point in time recovery from your latest backup.
> log-bin=mysql-bin
>
> # If you're using replication with chained slaves (A->B->C), you need to
> # enable this option on server B. It enables logging of updates done by
> # the slave thread into the slave's binary log.
> #log_slave_updates
>
> # Enable the full query log. Every query (even ones with incorrect
> # syntax) that the server receives will be logged. This is useful for
> # debugging, it is usually disabled in production use.
> #log
>
> # Print warnings to the error log file. If you have any problem with
> # MySQL you should enable logging of warnings and examine the error log
> # for possible explanations.
> #log_warnings
>
> # Log slow queries. Slow queries are queries which take more than the
> # amount of time defined in "long_query_time" or which do not use
> # indexes well, if log_long_format is enabled. It is normally good idea
> # to have this turned on if you frequently add new queries to the
> # system.
> log_slow_queries
>
> # All queries taking more than this amount of time (in seconds) will be
> # trated as slow. Do not use "1" as a value here, as this will result in
> # even very fast queries being logged from time to time (as MySQL
> # currently measures time with second accuracy only).
> long_query_time = 2
>
> # Log more information in the slow query log. Normally it is good to
> # have this turned on. This will enable logging of queries that are not
> # using indexes in addition to long running queries.
> log_long_format
>
> # The directory used by MySQL for storing temporary files. For example,
> # it is used to perform disk based large sorts, as well as for internal
> # and explicit temporary tables. It might be good to put it on a
> # swapfs/tmpfs filesystem, if you do not create very large temporary
> # files. Alternatively you can put it on dedicated disk. You can
> # specify multiple paths here by separating them by ";" - they will then
> # be used in a round-robin fashion.
> #tmpdir = /tmp
>
>
> # *** Replication related settings
>
>
> # Unique server identification number between 1 and 2^32-1. This value
> # is required for both master and slave hosts. It defaults to 1 if
> # "master-host" is not set, but will MySQL will not function as a master
> # if it is omitted.
> server-id = 1
>
> # Replication Slave (comment out master section to use this)
> #
> # To configure this host as a replication slave, you can choose between
> # two methods :
> #
> # 1) Use the CHANGE MASTER TO command (fully described in our manual) -
> # the syntax is:
> #
> # CHANGE MASTER TO MASTER_HOST=<host>, MASTER_PORT=<port>,
> # MASTER_USER=<user>, MASTER_PASSWORD=<password> ;
> #
> # where you replace <host>, <user>, <password> by quoted strings and
> # <port> by the master's port number (3306 by default).
> #
> # Example:
> #
> # CHANGE MASTER TO MASTER_HOST='125.564.12.1', MASTER_PORT=3306,
> # MASTER_USER='joe', MASTER_PASSWORD='secret';
> #
> # OR
> #
> # 2) Set the variables below. However, in case you choose this method, 
> then
> # start replication for the first time (even unsuccessfully, for example
> # if you mistyped the password in master-password and the slave fails to
> # connect), the slave will create a master.info file, and any later
> # changes in this file to the variable values below will be ignored and
> # overridden by the content of the master.info file, unless you shutdown
> # the slave server, delete master.info and restart the slaver server.
> # For that reason, you may want to leave the lines below untouched
> # (commented) and instead use CHANGE MASTER TO (see above)
> #
> # required unique id between 2 and 2^32 - 1
> # (and different from the master)
> # defaults to 2 if master-host is set
> # but will not function as a slave if omitted
> #server-id = 2
> #
> # The replication master for this slave - required
> #master-host = <hostname>
> #
> # The username the slave will use for authentication when connecting
> # to the master - required
> #master-user = <username>
> #
> # The password the slave will authenticate with when connecting to
> # the master - required
> #master-password = <password>
> #
> # The port the master is listening on.
> # optional - defaults to 3306
> #master-port = <port>
>
> # Make the slave read-only. Only users with the SUPER privilege and the
> # replication slave thread will be able to modify data on it. You can
> # use this to ensure that no applications will accidently modify data on
> # the slave instead of the master
> #read_only
>
>
> #*** MyISAM Specific options
>
>
> # Size of the Key Buffer, used to cache index blocks for MyISAM tables.
> # Do not set it larger than 30% of your available memory, as some memory
> # is also required by the OS to cache rows. Even if you're not using
> # MyISAM tables, you should still set it to 8-64M as it will also be
> # used for internal temporary disk tables.
> key_buffer_size = 32M
>
> # Size of the buffer used for doing full table scans of MyISAM tables.
> # Allocated per thread, if a full scan is needed.
> read_buffer_size = 2M
>
> # When reading rows in sorted order after a sort, the rows are read
> # through this buffer to avoid disk seeks. You can improve ORDER BY
> # performance a lot, if set this to a high value.
> # Allocated per thread, when needed.
> read_rnd_buffer_size = 16M
>
> # MyISAM uses special tree-like cache to make bulk inserts (that is,
> # INSERT ... SELECT, INSERT ... VALUES (...), (...), ..., and LOAD DATA
> # INFILE) faster. This variable limits the size of the cache tree in
> # bytes per thread. Setting it to 0 will disable this optimisation. Do
> # not set it larger than "key_buffer_size" for optimal performance.
> # This buffer is allocated when a bulk insert is detected.
> bulk_insert_buffer_size = 64M
>
> # This buffer is allocated when MySQL needs to rebuild the index in
> # REPAIR, OPTIMIZE, ALTER table statements as well as in LOAD DATA INFILE
> # into an empty table. It is allocated per thread so be careful with
> # large settings.
> myisam_sort_buffer_size = 128M
>
> # The maximum size of the temporary file MySQL is allowed to use while
> # recreating the index (during REPAIR, ALTER TABLE or LOAD DATA INFILE.
> # If the file-size would be bigger than this, the index will be created
> # through the key cache (which is slower).
> myisam_max_sort_file_size = 10G
>
> # If the temporary file used for fast index creation would be bigger
> # than using the key cache by the amount specified here, then prefer the
> # key cache method. This is mainly used to force long character keys in
> # large tables to use the slower key cache method to create the index.
> myisam_max_extra_sort_file_size = 10G
>
> # If a table has more than one index, MyISAM can use more than one
> # thread to repair them by sorting in parallel. This makes sense if you
> # have multiple CPUs and plenty of memory.
> myisam_repair_threads = 1
>
> # Automatically check and repair not properly closed MyISAM tables.
> myisam_recover
>
>
> # *** BDB Specific options ***
>
> # Use this option if you run a MySQL server with BDB support enabled but
> # you do not plan to use it. This will save memory and may speed up some
> # things.
> skip-bdb
>
>
> # *** INNODB Specific options ***
>
> # Use this option if you have a MySQL server with InnoDB support enabled
> # but you do not plan to use it. This will save memory and disk space
> # and speed up some things.
> #skip-innodb
>
> # Additional memory pool that is used by InnoDB to store metadata
> # information. If InnoDB requires more memory for this purpose it will
> # start to allocate it from the OS. As this is fast enough on most
> # recent operating systems, you normally do not need to change this
> # value. SHOW INNODB STATUS will display the current amount used.
> innodb_additional_mem_pool_size = 16M
>
> # InnoDB, unlike MyISAM, uses a buffer pool to cache both indexes and
> # row data. The bigger you set this the less disk I/O is needed to
> # access data in tables. On a dedicated database server you may set this
> # parameter up to 80% of the machine physical memory size. Do not set it
> # too large, though, because competition of the physical memory may
> # cause paging in the operating system. Note that on 32bit systems you
> # might be limited to 2-3.5G of user level memory per process, so do not
> # set it too high.
> innodb_buffer_pool_size = 2G
>
> # InnoDB stores data in one or more data files forming the tablespace.
> # If you have a single logical drive for your data, a single
> # autoextending file would be good enough. In other cases, a single file
> # per device is often a good choice. You can configure InnoDB to use raw
> # disk partitions as well - please refer to the manual for more info
> # about this.
> innodb_data_file_path = ibdata1:10M:autoextend
>
> # Set this option if you would like the InnoDB tablespace files to be
> # stored in another location. By default this is the MySQL datadir.
> #innodb_data_home_dir = <directory>
>
> # Number of IO threads to use for async IO operations. This value is
> # hardcoded to 4 on Unix, but on Windows disk I/O may benefit from a
> # larger number.
> innodb_file_io_threads = 4
>
> # If you run into InnoDB tablespace corruption, setting this to a nonzero
> # value will likely help you to dump your tables. Start from value 1 and
> # increase it until you're able to dump the table successfully.
> #innodb_force_recovery=1
>
> # Number of threads allowed inside the InnoDB kernel. The optimal value
> # depends highly on the application, hardware as well as the OS
> # scheduler properties. A too high value may lead to thread thrashing.
> innodb_thread_concurrency = 16
>
> # If set to 1, InnoDB will flush (fsync) the transaction logs to the
> # disk at each commit, which offers full ACID behavior. If you are
> # willing to compromise this safety, and you are running small
> # transactions, you may set this to 0 or 2 to reduce disk I/O to the
> # logs. Value 0 means that the log is only written to the log file and
> # the log file flushed to disk approximately once per second. Value 2
> # means the log is written to the log file at each commit, but the log
> # file is only flushed to disk approximately once per second.
> innodb_flush_log_at_trx_commit = 1
>
> # Speed up InnoDB shutdown. This will disable InnoDB to do a full purge
> # and insert buffer merge on shutdown. It may increase shutdown time a
> # lot, but InnoDB will have to do it on the next startup instead.
> #innodb_fast_shutdown
>
> # The size of the buffer InnoDB uses for buffering log data. As soon as
> # it is full, InnoDB will have to flush it to disk. As it is flushed
> # once per second anyway, it does not make sense to have it very large
> # (even with long transactions).
> innodb_log_buffer_size = 8M
>
> # Size of each log file in a log group. You should set the combined size
> # of log files to about 25%-100% of your buffer pool size to avoid
> # unneeded buffer pool flush activity on log file overwrite. However,
> # note that a larger logfile size will increase the time needed for the
> # recovery process.
> innodb_log_file_size = 256M
>
> # Total number of files in the log group. A value of 2-3 is usually good
> # enough.
> innodb_log_files_in_group = 3
>
> # Location of the InnoDB log files. Default is the MySQL datadir. You
> # may wish to point it to a dedicated hard drive or a RAID1 volume for
> # improved performance
> #innodb_log_group_home_dir
>
> # Maximum allowed percentage of dirty pages in the InnoDB buffer pool.
> # If it is reached, InnoDB will start flushing them out agressively to
> # not run out of clean pages at all. This is a soft limit, not
> # guaranteed to be held.
> innodb_max_dirty_pages_pct = 90
>
> # The flush method InnoDB will use for Log. The tablespace always uses
> # doublewrite flush logic. The default value is "fdatasync", another
> # option is "O_DSYNC".
> #innodb_flush_method=O_DSYNC
>
> # How long an InnoDB transaction should wait for a lock to be granted
> # before being rolled back. InnoDB automatically detects transaction
> # deadlocks in its own lock table and rolls back the transaction. If you
> # use the LOCK TABLES command, or other transaction-safe storage engines
> # than InnoDB in the same transaction, then a deadlock may arise which
> # InnoDB cannot notice. In cases like this the timeout is useful to
> # resolve the situation.
> innodb_lock_wait_timeout = 120
>
>
> [mysqldump]
> # Do not buffer the whole result set in memory before writing it to
> # file. Required for dumping very large tables
> quick
>
> max_allowed_packet = 16M
>
> [mysql]
> no-auto-rehash
>
> # Only allow UPDATEs and DELETEs that use keys.
> #safe-updates
>
> [isamchk]
> key_buffer = 512M
> sort_buffer_size = 512M
> read_buffer = 8M
> write_buffer = 8M
>
> [myisamchk]
> key_buffer = 512M
> sort_buffer_size = 512M
> read_buffer = 8M
> write_buffer = 8M
>
> [mysqlhotcopy]
> interactive-timeout
>
> [mysqld_safe]
> # Increase the amount of open files allowed per process. Warning: Make
> # sure you have set the global system limit high enough! The high value
> # is required for a large number of opened tables
> open-files-limit = 8192
> _______________________________________________
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-- 
Matt Hartzell
Founder, Owner
Digital Technology and Surveillance
mchartzell@getdts.com
www.getdts.com

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