Date: Thu, 25 Nov 2021 12:18:27 GMT From: pkg-fallout@FreeBSD.org To: wen@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - main-i386-default][science/R-cran-AMORE] Failed for R-cran-AMORE-0.2.14_7 in stage Message-ID: <202111251218.1APCIRvR074576@beefy17.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/pedabbf820119_s3ede04c78c/logs/R-cran-AMORE-0.2.14_7.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=pedabbf820119_s3ede04c78c Log: =>> Building science/R-cran-AMORE build started at Thu Nov 25 12:17:50 UTC 2021 port directory: /usr/ports/science/R-cran-AMORE package name: R-cran-AMORE-0.2.14_7 building for: FreeBSD main-i386-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400042 i386 maintained by: wen@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400042 Jail OSVERSION: 1400042 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh UNAME_p=i386 UNAME_m=i386 OSVERSION=1400042 UNAME_v=FreeBSD 14.0-CURRENT 1400042 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.cache HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.cache HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local C C="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/AMORE OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/AMORE" EXAMPLESDIR="share/examples/AMORE" DATADIR="share/AMORE" WWWDIR="www/AMORE" ETCDIR="etc/AMORE" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/AMORE DOCSDIR=/usr/local/share/doc/AMORE EXAMPLESDIR=/usr/local/share/examples/AMORE WWWDIR=/usr/local/www/AMORE ETCDIR=/usr/local/etc/AMORE --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400042 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5.pkg [main-i386-default-job-02] Installing pkg-1.17.5... [main-i386-default-job-02] Extracting pkg-1.17.5: .......... done ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-AMORE-0.2.14_7 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building => SHA256 Checksum OK for AMORE_0.2-14.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building ===> Extracting for R-cran-AMORE-0.2.14_7 => SHA256 Checksum OK for AMORE_0.2-14.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-AMORE-0.2.14_7 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-4.1.2.pkg [main-i386-default-job-02] Installing R-4.1.2... [main-i386-default-job-02] `-- Installing cairo-1.17.4,3... [main-i386-default-job-02] | `-- Installing fontconfig-2.13.94_1,1... [main-i386-default-job-02] | | `-- Installing expat-2.4.1... [main-i386-default-job-02] | | `-- Extracting expat-2.4.1: .......... done [main-i386-default-job-02] | | `-- Installing freetype2-2.11.0... [main-i386-default-job-02] | | `-- Installing png-1.6.37_1... [main-i386-default-job-02] | | `-- Extracting png-1.6.37_1: .......... done [main-i386-default-job-02] | | `-- Extracting freetype2-2.11.0: .......... done [main-i386-default-job-02] | `-- Extracting fontconfig-2.13.94_1,1: .......... done Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts <snip> [main-i386-default-job-02] | `-- Extracting encodings-1.0.5,1: .......... done [main-i386-default-job-02] | `-- Installing fribidi-1.0.11... [main-i386-default-job-02] | `-- Extracting fribidi-1.0.11: .......... done [main-i386-default-job-02] | `-- Installing libXft-2.3.3... [main-i386-default-job-02] | `-- Extracting libXft-2.3.3: .......... done [main-i386-default-job-02] | `-- Installing xorg-fonts-truetype-7.7_1... [main-i386-default-job-02] | | `-- Installing dejavu-2.37_1... [main-i386-default-job-02] | | `-- Installing mkfontscale-1.2.1... [main-i386-default-job-02] | | | `-- Installing libfontenc-1.1.4... [main-i386-default-job-02] | | | `-- Extracting libfontenc-1.1.4: ......... done [main-i386-default-job-02] | | `-- Extracting mkfontscale-1.2.1: ....... done [main-i386-default-job-02] | | `-- Extracting dejavu-2.37_1: .......... done [main-i386-default-job-02] | | `-- Installing font-bh-ttf-1.0.3_4... [main-i386-default-job-02] | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done [main-i386-default-job-02] | | `-- Installing font-misc-ethiopic-1.0.4... [main-i386-default-job-02] | | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [main-i386-default-job-02] | | `-- Installing font-misc-meltho-1.0.3_4... [main-i386-default-job-02] | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done [main-i386-default-job-02] `-- Extracting pango-1.48.7: .......... done [main-i386-default-job-02] `-- Installing pcre2-10.39... [main-i386-default-job-02] `-- Extracting pcre2-10.39: .......... done [main-i386-default-job-02] `-- Installing tcl86-8.6.12... [main-i386-default-job-02] `-- Extracting tcl86-8.6.12: .......... done [main-i386-default-job-02] `-- Installing tk86-8.6.12... [main-i386-default-job-02] `-- Extracting tk86-8.6.12: .......... done [main-i386-default-job-02] Extracting R-4.1.2: .......... done ===== Message from freetype2-2.11.0: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from python38-3.8.12_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py38-gdbm databases/py-gdbm@py38 py38-sqlite3 databases/py-sqlite3@py38 py38-tkinter x11-toolkits/py-tkinter@py38 ===== Message from ca_root_nss-3.71: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from gcc10-10.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===== Message from ghostscript9-agpl-base-9.52_20: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-AMORE-0.2.14_7 ===> R-cran-AMORE-0.2.14_7 depends on executable: gfortran10 - found ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-AMORE-0.2.14_7 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - found ===> R-cran-AMORE-0.2.14_7 depends on executable: gfortran10 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-AMORE-0.2.14_7 ===> Generating temporary packing list * installing *source* package 'AMORE' ... ** package 'AMORE' successfully unpacked and MD5 sums checked ** using staged installation ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src' cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c ADAPTgd.c -o ADAPTgd.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c ADAPTgdwm.c -o ADAPTgdwm.o ADAPTgdwm.c:136:73: warning: relational comparison result unused [-Wunused-comparison] ptneuron->method_dep_variables.adaptgdwm.former_bias_change <- bias_change; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 1 warning generated. cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c BATCHgd.c -o BATCHgd.o In file included from BATCHgd.c:16: /usr/include/omp.h:484:39: error: expected 'match' clause on 'omp declare variant' directive #pragma omp begin declare variant match(device={kind(host)}) ^ /usr/local/lib/R/include/Rinternals.h:1640:17: note: expanded from macro 'match' #define match Rf_match ^ In file included from BATCHgd.c:16: /usr/include/omp.h:487:39: error: expected 'match' clause on 'omp declare variant' directive #pragma omp begin declare variant match(device={kind(nohost)}) ^ /usr/local/lib/R/include/Rinternals.h:1640:17: note: expanded from macro 'match' #define match Rf_match ^ 2 errors generated. gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:168: BATCHgd.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src' ERROR: compilation failed for package 'AMORE' * removing '/wrkdirs/usr/ports/science/R-cran-AMORE/work/stage/usr/local/lib/R/library/AMORE' *** Error code 1 Stop. make: stopped in /usr/ports/science/R-cran-AMORE
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