Date: Wed, 16 Dec 2020 16:19:31 +0000 (UTC) From: Thierry Thomas <thierry@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r558228 - head/science/PETSc Message-ID: <202012161619.0BGGJVXl041002@repo.freebsd.org>
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Author: thierry Date: Wed Dec 16 16:19:30 2020 New Revision: 558228 URL: https://svnweb.freebsd.org/changeset/ports/558228 Log: Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x. Changelogs avilable at <https://www.mcs.anl.gov/petsc/documentation/changes/index.html>. PR: 249757 Submitted by: /me Reported by: swills@ Approved by: maintainer´s time-out Modified: head/science/PETSc/Makefile head/science/PETSc/distinfo head/science/PETSc/pkg-plist Modified: head/science/PETSc/Makefile ============================================================================== --- head/science/PETSc/Makefile Wed Dec 16 15:22:45 2020 (r558227) +++ head/science/PETSc/Makefile Wed Dec 16 16:19:30 2020 (r558228) @@ -2,10 +2,9 @@ # $FreeBSD$ PORTNAME= PETSc -DISTVERSION= 3.10.2 -PORTREVISION= 4 +PORTVERSION= 3.14.1 CATEGORIES= science devel -MASTER_SITES= http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ +MASTER_SITES= https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org @@ -14,19 +13,25 @@ COMMENT= Suite of data structures and routines from Ar LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +BUILD_DEPENDS= cmake:devel/cmake LIB_DEPENDS= libmpich.so:net/mpich -USES= blaslapack fortran gmake python:2.7 shebangfix xorg +USES= blaslapack fortran gmake python:3.7+ shebangfix xorg GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-shared-libraries=1 \ --with-mpi-dir=${LOCALBASE} \ + --with-python=1 --with-python-pkg-config=${LOCALBASE}/libdata/pkgconfig \ + FCFLAGS="${FCFLAGS}" FFLAGS="${FCFLAGS}" \ ${CONFIGURE_ARGS_${ARCH}} CPPFLAGS="${CPPFLAGS}" \ - LDFLAGS="${LDFLAGS}" LIBS="" + AR=${AR} RANLIB=${RANLIB} \ + MAKEFLAGS="${MAKEFLAGS}" LDFLAGS="${LDFLAGS}" LIBS="" CONFIGURE_ARGS_amd64= CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" CONFIGURE_ARGS_i386= CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" +CONFIGURE_LOG= configure.log USE_XORG= x11 MAKEFILE= makefile -SHEBANG_FILES= lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/*.bash config/*.py +SHEBANG_FILES= lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/*.bash config/*.py \ + lib/petsc/bin/petscnagfor lib/petsc/bin/petsc-performance-view USE_LDCONFIG= yes TEST_TARGET= test BINARY_ALIAS= python=${PYTHON_CMD} @@ -35,6 +40,9 @@ LDFLAGS+= ${LOCALBASE}/lib/libmpi.so DATADIR= ${PREFIX}/share/${PORTNAME:tl} PLIST_SUB= SHLIB=${DISTVERSION} SHL=${DISTVERSION:C/\.[0-9]$//} + +pre-configure: + ${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|' ${WRKSRC}/${CONFIGURE_SCRIPT} post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpetsc.so.${DISTVERSION} Modified: head/science/PETSc/distinfo ============================================================================== --- head/science/PETSc/distinfo Wed Dec 16 15:22:45 2020 (r558227) +++ head/science/PETSc/distinfo Wed Dec 16 16:19:30 2020 (r558228) @@ -1,3 +1,3 @@ -TIMESTAMP = 1540050650 -SHA256 (petsc-3.10.2.tar.gz) = 9d3381bcf9c63abe6521b21a88efc70f8e893293503cff497971d0d9c1ec68cc -SIZE (petsc-3.10.2.tar.gz) = 31083036 +TIMESTAMP = 1606837215 +SHA256 (petsc-3.14.1.tar.gz) = dde246d97ca77e7e4165ff3c74e5517a2f08316cd8cb6d2c4e172743c1836ef8 +SIZE (petsc-3.14.1.tar.gz) = 37888585 Modified: head/science/PETSc/pkg-plist ============================================================================== --- head/science/PETSc/pkg-plist Wed Dec 16 15:22:45 2020 (r558227) +++ head/science/PETSc/pkg-plist Wed Dec 16 16:19:30 2020 (r558228) @@ -1,3 +1,4 @@ +include/ftn-auto/petscloghf.c include/petsc.h include/petsc.mod include/petsc/finclude/petsc.h @@ -8,8 +9,8 @@ include/petsc/finclude/petscdmda.h include/petsc/finclude/petscdmlabel.h include/petsc/finclude/petscdmnetwork.h include/petsc/finclude/petscdmplex.h +include/petsc/finclude/petscdmswarm.h include/petsc/finclude/petscdraw.h -include/petsc/finclude/petscerror.h include/petsc/finclude/petscis.h include/petsc/finclude/petscksp.h include/petsc/finclude/petsclog.h @@ -24,6 +25,7 @@ include/petsc/finclude/petscvec.h include/petsc/finclude/petscviewer.h include/petsc/private/bagimpl.h include/petsc/private/characteristicimpl.h +include/petsc/private/cudavecimpl.h include/petsc/private/dmadaptorimpl.h include/petsc/private/dmdaimpl.h include/petsc/private/dmfieldimpl.h @@ -34,6 +36,8 @@ include/petsc/private/dmmbimpl.h include/petsc/private/dmnetworkimpl.h include/petsc/private/dmpatchimpl.h include/petsc/private/dmpleximpl.h +include/petsc/private/dmproductimpl.h +include/petsc/private/dmstagimpl.h include/petsc/private/dmswarmimpl.h include/petsc/private/drawimpl.h include/petsc/private/dtimpl.h @@ -44,6 +48,7 @@ include/petsc/private/glvisviewerimpl.h include/petsc/private/hashmap.h include/petsc/private/hashmapi.h include/petsc/private/hashmapij.h +include/petsc/private/hashmapiv.h include/petsc/private/hashset.h include/petsc/private/hashseti.h include/petsc/private/hashsetij.h @@ -59,40 +64,50 @@ include/petsc/private/linesearchimpl.h include/petsc/private/logimpl.h include/petsc/private/matimpl.h include/petsc/private/matorderimpl.h +include/petsc/private/partitionerimpl.h include/petsc/private/pcgamgimpl.h include/petsc/private/pcimpl.h include/petsc/private/pcmgimpl.h include/petsc/private/pcpatchimpl.h include/petsc/private/petscconvestimpl.h include/petsc/private/petscdsimpl.h +include/petsc/private/petscelemental.h include/petsc/private/petscfeimpl.h include/petsc/private/petscfptimpl.h include/petsc/private/petscfvimpl.h +include/petsc/private/petschpddm.h +include/petsc/private/petschypre.h include/petsc/private/petscimpl.h +include/petsc/private/petscscalapack.h +include/petsc/private/sectionimpl.h include/petsc/private/sfimpl.h include/petsc/private/snesimpl.h include/petsc/private/taoimpl.h include/petsc/private/taolinesearchimpl.h +include/petsc/private/tshistoryimpl.h include/petsc/private/tsimpl.h include/petsc/private/vecimpl.h include/petsc/private/vecscatterimpl.h include/petsc/private/vieweradios2impl.h include/petsc/private/vieweradiosimpl.h +include/petsc/private/viewerexodusiiimpl.h +include/petsc/private/viewerhdf5impl.h include/petsc/private/viewerimpl.h +include/petscaijdevice.h include/petscao.h include/petscao.mod include/petscaodef.mod include/petscbag.h include/petscblaslapack.h include/petscblaslapack_mangle.h -include/petscblaslapack_stdcall.h include/petscbt.h include/petsccharacteristic.h include/petscconf.h include/petscconfiginfo.h include/petscconvest.h include/petscctable.h -include/petsccuda.h +include/petsccublas.h +include/petsccxxcomplexfix.h include/petscdef.mod include/petscdm.h include/petscdm.mod @@ -121,10 +136,15 @@ include/petscdmpatchdef.mod include/petscdmplex.h include/petscdmplex.mod include/petscdmplexdef.mod +include/petscdmplextypes.h +include/petscdmproduct.h include/petscdmredundant.h include/petscdmshell.h include/petscdmsliced.h +include/petscdmstag.h include/petscdmswarm.h +include/petscdmswarm.mod +include/petscdmswarmdef.mod include/petscdmtypes.h include/petscdraw.h include/petscdrawtypes.h @@ -138,7 +158,6 @@ include/petscfetypes.h include/petscfix.h include/petscfv.h include/petscfvtypes.h -include/petscgll.h include/petscis.h include/petscis.mod include/petscisdef.mod @@ -148,6 +167,8 @@ include/petscksp.h include/petscksp.mod include/petsckspdef.mod include/petsckspdefdummy.mod +include/petsclandau.h +include/petsclayouthdf5.h include/petsclog.h include/petscmachineinfo.h include/petscmat.h @@ -160,12 +181,16 @@ include/petscmath.h include/petscmathypre.h include/petscmatlab.h include/petscoptions.h +include/petscpartitioner.h include/petscpc.h include/petscpc.mod include/petscpcdef.mod include/petscpcdefdummy.mod include/petscpctypes.h include/petscpf.h +include/petscpkg_version.h +include/petscsection.h +include/petscsectiontypes.h include/petscsf.h include/petscsftypes.h include/petscsnes.h @@ -176,6 +201,7 @@ include/petscsys.h include/petscsys.mod include/petscsysdef.mod include/petscsysdefdummy.mod +include/petscsystypes.h include/petsctao.h include/petsctao.mod include/petsctaodef.mod @@ -187,12 +213,14 @@ include/petsctsdef.mod include/petsctsdefdummy.mod include/petscvalgrind.h include/petscvec.h +include/petscvec.hpp include/petscvec.mod include/petscvecdef.mod include/petscvecdefdummy.mod include/petscversion.h include/petscviennacl.h include/petscviewer.h +include/petscviewerexodusii.h include/petscviewerhdf5.h include/petscviewersaws.h include/petscviewertypes.h @@ -203,17 +231,24 @@ lib/libpetsc.so.%%SHLIB%% lib/petsc/bin/PetscBinaryIO.py lib/petsc/bin/PetscBinaryIOTrajectory.py lib/petsc/bin/PetscBinaryIO_tests.py +lib/petsc/bin/configureTAS.py +lib/petsc/bin/extract.py +lib/petsc/bin/petsc-performance-view lib/petsc/bin/petsc_conf.py lib/petsc/bin/petsc_gen_xdmf.py +lib/petsc/bin/petsc_tas_analysis.py +lib/petsc/bin/petsc_tas_style.mplstyle lib/petsc/bin/petscdiff lib/petsc/bin/petsclogformat.py lib/petsc/bin/petscmpiexec +lib/petsc/bin/petscnagfor lib/petsc/bin/petscnagupgrade.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/getSAWs.bash lib/petsc/bin/saws/getStack.bash lib/petsc/bin/taucc.py -lib/petsc/conf/PETScBuildInternal.cmake +lib/petsc/conf/configure-hash +lib/petsc/conf/memoryerror.log lib/petsc/conf/modules/petsc/%%SHLIB%% lib/petsc/conf/petscrules lib/petsc/conf/petscvariables @@ -223,11 +258,15 @@ lib/petsc/conf/test lib/petsc/conf/test.common lib/petsc/conf/variables libdata/pkgconfig/PETSc.pc +libdata/pkgconfig/petsc.pc +%%DATADIR%%/Makefile.user +%%DATADIR%%/datafiles/matrices/LFAT5.mtx %%DATADIR%%/datafiles/matrices/amesos2_test_mat0.mtx %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float32 %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float64 %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float32 %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float64 +%%DATADIR%%/datafiles/matrices/m_05_05_crk.mtx %%DATADIR%%/datafiles/matrices/nh-complex-int32-float32 %%DATADIR%%/datafiles/matrices/nh-complex-int32-float64 %%DATADIR%%/datafiles/matrices/nh-complex-int64-float32 @@ -243,6 +282,8 @@ libdata/pkgconfig/PETSc.pc %%DATADIR%%/datafiles/matrices/spd-real-int64-float64 %%DATADIR%%/datafiles/matrices/tiny_system %%DATADIR%%/datafiles/matrices/tiny_system_with_x0 +%%DATADIR%%/datafiles/matrices/tiny_system_with_x0.mat +%%DATADIR%%/datafiles/matrices/tiny_system_with_x0_complex.mat %%DATADIR%%/datafiles/matrices/tiny_system_x0 %%DATADIR%%/datafiles/meshes/2Dgrd.exo %%DATADIR%%/datafiles/meshes/FourBrickHex-large.exo @@ -253,20 +294,45 @@ libdata/pkgconfig/PETSc.pc %%DATADIR%%/datafiles/meshes/Rect-tri3.exo %%DATADIR%%/datafiles/meshes/TwoQuads.exo %%DATADIR%%/datafiles/meshes/annulus-20.exo +%%DATADIR%%/datafiles/meshes/barycentricallyrefinedcube.h5 %%DATADIR%%/datafiles/meshes/blockcylinder-50.exo %%DATADIR%%/datafiles/meshes/blockcylinder-50.h5 %%DATADIR%%/datafiles/meshes/blockcylinder-50.xmf %%DATADIR%%/datafiles/meshes/cow.msh %%DATADIR%%/datafiles/meshes/cube_5tets.cas %%DATADIR%%/datafiles/meshes/cube_5tets_ascii.cas -%%DATADIR%%/datafiles/meshes/cube_periodic.msh -%%DATADIR%%/datafiles/meshes/cube_periodic_bin.msh %%DATADIR%%/datafiles/meshes/cylinder.med %%DATADIR%%/datafiles/meshes/doublet-tet.msh +%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-32.msh +%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-64.msh +%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh2 +%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh4 +%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-32.msh +%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-64.msh +%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh2 +%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh4 +%%DATADIR%%/datafiles/meshes/gmsh-3d.geo +%%DATADIR%%/datafiles/meshes/gmsh-B2qua.geo +%%DATADIR%%/datafiles/meshes/gmsh-B2tri.geo +%%DATADIR%%/datafiles/meshes/gmsh-B3hex.geo +%%DATADIR%%/datafiles/meshes/gmsh-B3tet.geo +%%DATADIR%%/datafiles/meshes/gmsh-hex.geo +%%DATADIR%%/datafiles/meshes/gmsh-qua.geo +%%DATADIR%%/datafiles/meshes/gmsh-seg.geo +%%DATADIR%%/datafiles/meshes/gmsh-tet.geo +%%DATADIR%%/datafiles/meshes/gmsh-tri.geo +%%DATADIR%%/datafiles/meshes/gmsh-vtx.geo +%%DATADIR%%/datafiles/meshes/gmsh-wed.geo %%DATADIR%%/datafiles/meshes/grid_c.cgns %%DATADIR%%/datafiles/meshes/horse.ply.bz2 +%%DATADIR%%/datafiles/meshes/hybrid_3d_cube.msh +%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.exo +%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.msh %%DATADIR%%/datafiles/meshes/hybrid_tetwedge.msh %%DATADIR%%/datafiles/meshes/hybrid_triquad.msh +%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere.msh +%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere_bin.msh +%%DATADIR%%/datafiles/meshes/nozzle.egadslite %%DATADIR%%/datafiles/meshes/sevenside-quad-15.exo %%DATADIR%%/datafiles/meshes/sevenside-quad.exo %%DATADIR%%/datafiles/meshes/sevenside.exo @@ -283,6 +349,7 @@ libdata/pkgconfig/PETSc.pc %%DATADIR%%/datafiles/meshes/surfacesphere_bin.msh %%DATADIR%%/datafiles/meshes/texas.msh %%DATADIR%%/datafiles/meshes/tut21.cgns +%%DATADIR%%/datafiles/meshes/unit_sphere.egadslite %%DATADIR%%/matlab/@PetscOpenFile/PetscOpenFile.m %%DATADIR%%/matlab/@PetscOpenFile/close.m %%DATADIR%%/matlab/@PetscOpenFile/read.m @@ -322,3 +389,4 @@ libdata/pkgconfig/PETSc.pc %%DATADIR%%/saws/js/utils.js %%DATADIR%%/saws/readme %%DATADIR%%/xml/performance_xml2html.xsl +@dir lib/petsc/bin/__pycache__
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