From nobody Tue Aug 4 20:10:43 2026 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4hF4RS2DfNz6nLcd for ; Tue, 04 Aug 2026 20:10:44 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "YR1" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id 4hF4RR4MHsz3TqK for ; Tue, 04 Aug 2026 20:10:43 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1785874243; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jb+TS27XWUOG6SNw/YuMJL9h77iwsA2wV5PfLbaQAys=; b=c20BoxRMyte0eId0rAo+R1A3xKwsS2XoJAkO/HMFiXtaAj835LRnKHjonoBaVuOSTIjupA Dis0zVylZHstTxsKBEozhY88HLLXmu+ESPfg3I1bEh21owfSQppuxAKGnlmTwhpAWyLLTk J53X/YoXjV6+BblojdoidtFbBYqCuIArdOM0U8e1JZYhozm+2XLSgMm9t4vLbJlIEuYk8c zwe4kEIZtcrR1KQRAFpZWbJyN1FYfAEM3AUiqhw+95XF+yig0MixuHfoVWGskrHm+a9aH3 pAg94TxQAlHwxy1v0OpPCxPPrZkvpZQVT1QeDuOKjZ4qrjTzOCiaWjRVpeToSA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1785874243; a=rsa-sha256; cv=none; b=AybIefPzQpoMCsXEV3SWqnHfe9Ra2dFYEmEZsAf1MLetFFPC5YKQCU2qMuFLhjgkh7XOwm lF7FNMovDXOKYP1ZCCUUAZYV7Nbe/5figt7eJHKKt3tUl3MnZRDQnqXwn8z505Gk5xgwr5 D2Ke1GZNtQjT6IpavDX8cDKSAbtFzaELAFJ7pIDdTshgfQ0z0+IrzLY+hrV0DaoGfAfsQp iaJut7IXth492Hs8AFUxWAuj5b8TyxguyD7Vp2VuNe49Yd8LTz8dpvPtF0jff6QP5+Z8ji ifKcOS2nI5Mv4v8ZxCRTlzlnn2EFub6vvfyYSZm9KBuxpM02b5wVoAoh/rEITg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1785874243; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jb+TS27XWUOG6SNw/YuMJL9h77iwsA2wV5PfLbaQAys=; b=nKUV7fvxqwXnH1WjRSSzs24wCeTP9c4Qdpe5VtY2XJZ6asNrjTYtMB4n0CMHKlukjcRjKS DGinxOdhPp4tavSrCaYprc5VGuNAGp3KiDi+a26BZp0yR3n5EgDk1zoABFKHiGI9xx7pNV cavKRQRt4nMEOB53OcED1t+vDaeL6fSu3V0m2oiVR0bzBHvmFRMnR4ZWpqdqAMng3/Y6E0 zgYtb/n3/qmduLmyvVWobUhKArpaW+uHpqFaFzK/7PAZkjzXs/Skcuomk4MYzXMsZDjTKI /ICUoV9Y8EsrhbIlCuLNrEx1OuXJTmHXHIjGtOGwATO1zR6Rfa2N9wq2PfW0Xg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4hF4RR3CBTz12RV for ; Tue, 04 Aug 2026 20:10:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from git (uid 1279) (envelope-from git@FreeBSD.org) id 3cafd by gitrepo.freebsd.org (DragonFly Mail Agent v0.13+ on gitrepo.freebsd.org); Tue, 04 Aug 2026 20:10:43 +0000 To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: e7ab08dd27e3 - main - biology/py-resdk: update 22.0.=?utf-8?Q?0 =E2=86=92 22?=.2.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org List-Id: List-Post: List-Help: List-Subscribe: List-Unsubscribe: List-Owner: Precedence: list MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: e7ab08dd27e3b30a43a0a05af9de37646a180f99 Auto-Submitted: auto-generated Date: Tue, 04 Aug 2026 20:10:43 +0000 Message-Id: <6a724743.3cafd.49deaf7b@gitrepo.freebsd.org> The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=e7ab08dd27e3b30a43a0a05af9de37646a180f99 commit e7ab08dd27e3b30a43a0a05af9de37646a180f99 Author: Yuri Victorovich AuthorDate: 2026-08-04 07:27:55 +0000 Commit: Yuri Victorovich CommitDate: 2026-08-04 20:10:24 +0000 biology/py-resdk: update 22.0.0 → 22.2.3 --- biology/py-resdk/Makefile | 19 ++++++++++--------- biology/py-resdk/distinfo | 6 +++--- biology/py-resdk/files/patch-pyproject.toml | 12 ++++++++---- 3 files changed, 21 insertions(+), 16 deletions(-) diff --git a/biology/py-resdk/Makefile b/biology/py-resdk/Makefile index e5a760b44ac9..7d03541a348d 100644 --- a/biology/py-resdk/Makefile +++ b/biology/py-resdk/Makefile @@ -1,5 +1,5 @@ PORTNAME= resdk -DISTVERSION= 22.0.0 +DISTVERSION= 22.2.3 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,13 +12,12 @@ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PY_SETUPTOOLS} \ - ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=6.4.0:devel/py-setuptools-scm@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools-scm>=9.2.2:devel/py-setuptools-scm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= \ - ${PYTHON_PKGNAMEPREFIX}aiohttp>=3.9.3:www/py-aiohttp@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}aiohttp>=3.13.2:www/py-aiohttp@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}boto3>0:www/py-boto3@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}botocore-stubs>0:www/py-botocore-stubs@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}chardet>0:textproc/py-chardet@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}boto3-stubs>0:www/py-boto3-stubs@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}mypy-boto3-s3>0:devel/py-mypy-boto3-s3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}openpyxl>0:textproc/py-openpyxl@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ @@ -27,17 +26,19 @@ RUN_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}slumber>=0.7.1:www/py-slumber@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tzlocal>0:devel/py-tzlocal@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}urllib3>=2:net/py-urllib3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR} -RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}mypy-boto3-s3>0:devel/py-mypy-boto3-s3@${PY_FLAVOR} USES= python USE_PYTHON= pep517 autoplist pytest -TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} +TEST_ENV= ${MAKE_ENV} \ + PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ + PYTEST_ADDOPTS="-p no:ruff -p no:mypy -p no:black -p no:flake8 -p no:cov" NO_ARCH= yes -# tests as of 22.0.0: 171 passed, 1 warning in 9.20s +# tests as of 22.2.3: 168 passed, 2 warnings in 8.85s .include diff --git a/biology/py-resdk/distinfo b/biology/py-resdk/distinfo index 7fd202fb4e22..aaff29159689 100644 --- a/biology/py-resdk/distinfo +++ b/biology/py-resdk/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1743577078 -SHA256 (resdk-22.0.0.tar.gz) = 3fc0ea3f71c02621064b39bada380101f5810c0bf00e1d6df618ff1d8fab57e4 -SIZE (resdk-22.0.0.tar.gz) = 268555 +TIMESTAMP = 1785732501 +SHA256 (resdk-22.2.3.tar.gz) = 6f733082e1cfe7612f75b4bb23185eeff75877144ed880227fe22688318ae387 +SIZE (resdk-22.2.3.tar.gz) = 273333 diff --git a/biology/py-resdk/files/patch-pyproject.toml b/biology/py-resdk/files/patch-pyproject.toml index a9e3f87ed2f2..cd7552b7228b 100644 --- a/biology/py-resdk/files/patch-pyproject.toml +++ b/biology/py-resdk/files/patch-pyproject.toml @@ -1,10 +1,14 @@ ---- pyproject.toml.orig 2023-01-28 05:39:12 UTC +-- Relax the setuptools version requirement to match the version available in the +-- FreeBSD ports tree (devel/py-setuptools), avoiding a forced upgrade of the +-- build tool port. + +--- pyproject.toml.orig 2026-02-18 10:05:35 UTC +++ pyproject.toml @@ -1,6 +1,6 @@ [build-system] requires = [ -- "setuptools >= 64.0.0", -+ "setuptools >= 0", - "setuptools_scm >= 6.4.0", +- "setuptools >= 80.9.0", ++ "setuptools >= 63.1.0", + "setuptools_scm >= 9.2.2" ] build-backend = "setuptools.build_meta"