From owner-svn-ports-head@freebsd.org Fri Sep 18 06:16:33 2015 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 17B879CFD0A; Fri, 18 Sep 2015 06:16:33 +0000 (UTC) (envelope-from wen@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 088A41230; Fri, 18 Sep 2015 06:16:33 +0000 (UTC) (envelope-from wen@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.70]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id t8I6GW5h071114; Fri, 18 Sep 2015 06:16:32 GMT (envelope-from wen@FreeBSD.org) Received: (from wen@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id t8I6GWl8071110; Fri, 18 Sep 2015 06:16:32 GMT (envelope-from wen@FreeBSD.org) Message-Id: <201509180616.t8I6GWl8071110@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: wen set sender to wen@FreeBSD.org using -f From: Wen Heping Date: Fri, 18 Sep 2015 06:16:31 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r397226 - head/science/ghmm X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 18 Sep 2015 06:16:33 -0000 Author: wen Date: Fri Sep 18 06:16:31 2015 New Revision: 397226 URL: https://svnweb.freebsd.org/changeset/ports/397226 Log: - Update to 0.9.r3 - Add LICENSE - Pet portlint Modified: head/science/ghmm/Makefile head/science/ghmm/distinfo head/science/ghmm/pkg-descr head/science/ghmm/pkg-plist Modified: head/science/ghmm/Makefile ============================================================================== --- head/science/ghmm/Makefile Fri Sep 18 05:54:48 2015 (r397225) +++ head/science/ghmm/Makefile Fri Sep 18 06:16:31 2015 (r397226) @@ -2,21 +2,23 @@ # $FreeBSD$ PORTNAME= ghmm -PORTVERSION= 0.7.0b -PORTREVISION= 1 +DISTVERSION= 0.9-rc3 CATEGORIES= science math -MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION} +MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${DISTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= General Hidden Markov Model Library in C +LICENSE= GPLv3 + +#BUILD_DEPENDS= swig:${PORTSDIR}/devel/swig13 + GNU_CONFIGURE= yes INSTALL_TARGET= install-strip -USES= libtool -USE_LDCONFIG= yes -WRKSRC= ${WRKDIR}/${PORTNAME}-0.7.0 +USE_GNOME= libxml2 +USES= autoreconf libtool pkgconfig +CONFIGURE_ARGS+= --without-python -post-patch: - @${REINPLACE_CMD} 's|tests doc VisualC|tests VisualC|' ${WRKSRC}/configure +USE_LDCONFIG= yes .include Modified: head/science/ghmm/distinfo ============================================================================== --- head/science/ghmm/distinfo Fri Sep 18 05:54:48 2015 (r397225) +++ head/science/ghmm/distinfo Fri Sep 18 06:16:31 2015 (r397226) @@ -1,2 +1,2 @@ -SHA256 (ghmm-0.7.0b.tar.gz) = a1e5a6fbd2c03901da974e192780cf880feab78baa648e10f50b819801bea7ed -SIZE (ghmm-0.7.0b.tar.gz) = 761628 +SHA256 (ghmm-0.9-rc3.tar.gz) = c42462ff4f87aadd5efe7bb6adb59657786ed71046ba924111bc28c7cbb588d0 +SIZE (ghmm-0.9-rc3.tar.gz) = 770526 Modified: head/science/ghmm/pkg-descr ============================================================================== --- head/science/ghmm/pkg-descr Fri Sep 18 05:54:48 2015 (r397225) +++ head/science/ghmm/pkg-descr Fri Sep 18 06:16:31 2015 (r397226) @@ -4,4 +4,4 @@ types of Hidden Markov Models and algori discrete, continous emissions, basic training, HMM clustering, HMM mixtures. -WWW: http://ghmm.sourceforge.net/ +WWW: http://ghmm.sourceforge.net/ Modified: head/science/ghmm/pkg-plist ============================================================================== --- head/science/ghmm/pkg-plist Fri Sep 18 05:54:48 2015 (r397225) +++ head/science/ghmm/pkg-plist Fri Sep 18 06:16:31 2015 (r397226) @@ -1,45 +1,43 @@ -bin/probdist bin/cluster +bin/ghmm-config +bin/probdist bin/scluster bin/smix_hmm -bin/ghmm-config -include/ghmm/ghmm.h +include/ghmm/cfbgibbs.h +include/ghmm/cluster.h +include/ghmm/discrime.h +include/ghmm/fbgibbs.h include/ghmm/foba.h +include/ghmm/ghmm.h +include/ghmm/ghmmconfig.h +include/ghmm/gradescent.h +include/ghmm/kbest.h include/ghmm/model.h -include/ghmm/cluster.h -include/ghmm/scluster.h -include/ghmm/root_finder.h +include/ghmm/obsolete.h +include/ghmm/pmodel.h +include/ghmm/psequence.h +include/ghmm/pviterbi.h +include/ghmm/pviterbi_propagate.h include/ghmm/reestimate.h +include/ghmm/rng.h +include/ghmm/scanner.h +include/ghmm/scluster.h +include/ghmm/sdfoba.h +include/ghmm/sdmodel.h include/ghmm/sequence.h -include/ghmm/viterbi.h include/ghmm/sfoba.h -include/ghmm/sviterbi.h -include/ghmm/smodel.h -include/ghmm/sdmodel.h -include/ghmm/sdfoba.h -include/ghmm/sreestimate.h include/ghmm/sgenerate.h -include/ghmm/smixturehmm.h -include/ghmm/scanner.h -include/ghmm/gauss_tail.h include/ghmm/smap_classify.h -include/ghmm/kbest.h -include/ghmm/gradescent.h -include/ghmm/discrime.h -include/ghmm/psequence.h -include/ghmm/pmodel.h -include/ghmm/linkedlist.h -include/ghmm/pviterbi.h -include/ghmm/pviterbi_propagate.h -include/ghmm/vector.h -include/ghmm/matrix.h -include/ghmm/const.h -include/ghmm/rng.h -include/ghmm/mes.h -include/ghmm/randvar.h -include/ghmm/internal.h +include/ghmm/smixturehmm.h +include/ghmm/smodel.h +include/ghmm/sreestimate.h +include/ghmm/sviterbi.h +include/ghmm/unsupported.h +include/ghmm/viterbi.h +include/ghmm/xmlreader.h +include/ghmm/xmlwriter.h lib/libghmm.a lib/libghmm.so -lib/libghmm.so.0 -lib/libghmm.so.0.0.7 -%%DATADIR%%/PHI_001_20.dat +lib/libghmm.so.1 +lib/libghmm.so.1.0.0 +%%DATADIR%%/ghmm.dtd.1.0