Date: Sat, 19 Mar 2005 04:51:17 GMT From: "Pedro F. Giffuni" <giffunip@asme.org> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/79005: Update math/fbm to version 20041110 Message-ID: <200503190451.j2J4pH73096875@www.freebsd.org> Resent-Message-ID: <200503190500.j2J506Gt076036@freefall.freebsd.org>
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>Number: 79005
>Category: ports
>Synopsis: Update math/fbm to version 20041110
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Sat Mar 19 05:00:06 GMT 2005
>Closed-Date:
>Last-Modified:
>Originator: Pedro F. Giffuni
>Release: 5.3R
>Organization:
>Environment:
FreeBSD giffuni.etb.net.co 5.3-RELEASE FreeBSD 5.3-RELEASE #0: Fri Nov 5 04:19:18 UTC 2004 root@harlow.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386
>Description:
Update math/fbm... according to the author:
"Except for the lightly-documented addition of Hamiltonian importance
sampling, this release contains only some fairly minor (though useful)
extensions and some bug fixes."
>How-To-Repeat:
>Fix:
patch follows:
diff -ruN fbm.orig/Makefile fbm/Makefile
--- fbm.orig/Makefile Fri Mar 18 10:03:44 2005
+++ fbm/Makefile Fri Mar 18 23:42:48 2005
@@ -6,18 +6,18 @@
#
PORTNAME= fbm
-PORTVERSION= 20030629
+PORTVERSION= 20041110
CATEGORIES= math
MASTER_SITES= ftp://ftp.cs.utoronto.ca/pub/radford/
-DISTNAME= ${PORTNAME}.2003-06-29
+DISTNAME= ${PORTNAME}.2004-11-10
EXTRACT_SUFX= .tar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Flexible Bayesian Modeling and Markov Chain Sampling
+NO_LATEST_LINK= yes
USE_REINPLACE= yes
-NO_LATEST_LINK= yes
SCRIPTS = bvg-circ bvg-wrap dist-circ dist-wrap gp-circ \
gp-wrap dft-circ dft-wrap mix-circ mix-wrap \
net-circ net-wrap
@@ -41,7 +41,7 @@
net-gd net-gen net-genp net-grad-test net-hist \
net-mc net-plt net-pred net-rej net-spec \
net-stepsizes net-tbl rand-seed series
-TEXT= dft-genp mix-genp
+OTHER= dft-genp mix-genp
post-patch:
@${REINPLACE_CMD} -e 's+%%CC%%+${CC}+g;' ${WRKSRC}/make.include
diff -ruN fbm.orig/distinfo fbm/distinfo
--- fbm.orig/distinfo Fri Mar 18 10:03:44 2005
+++ fbm/distinfo Fri Mar 18 11:03:27 2005
@@ -1,2 +1,2 @@
-MD5 (fbm.2003-06-29.tar.Z) = d883b507c88878757a3208c3fc72b630
-SIZE (fbm.2003-06-29.tar.Z) = 1374677
+MD5 (fbm.2004-11-10.tar.Z) = 9a76f13502de10a3888076718fbe074c
+SIZE (fbm.2004-11-10.tar.Z) = 1422628
diff -ruN fbm.orig/pkg-message fbm/pkg-message
--- fbm.orig/pkg-message Fri Mar 18 10:03:44 2005
+++ fbm/pkg-message Fri Mar 18 23:44:48 2005
@@ -1,4 +1,4 @@
- Copyright (c) 1995-2003 by Radford M. Neal
+ Copyright (c) 1995-2004 by Radford M. Neal
Permission is granted for anyone to copy, use, modify, or distribute these
programs and accompanying documents for any purpose, provided this copyright
diff -ruN fbm.orig/pkg-plist fbm/pkg-plist
--- fbm.orig/pkg-plist Fri Mar 18 10:03:44 2005
+++ fbm/pkg-plist Fri Mar 18 23:38:03 2005
@@ -142,6 +142,7 @@
%%PORTDOCS%%%%DOCSDIR%%/Release.2000-08-21.doc
%%PORTDOCS%%%%DOCSDIR%%/Release.2001-08-31.doc
%%PORTDOCS%%%%DOCSDIR%%/Release.2003-06-29.doc
+%%PORTDOCS%%%%DOCSDIR%%/Release.2004-11-10.doc
%%PORTDOCS%%%%DOCSDIR%%/bvg-initial.doc
%%PORTDOCS%%%%DOCSDIR%%/bvg-mc.doc
%%PORTDOCS%%%%DOCSDIR%%/bvg-plt.doc
@@ -193,6 +194,7 @@
%%PORTDOCS%%%%DOCSDIR%%/manual
%%PORTDOCS%%%%DOCSDIR%%/mc-ais.doc
%%PORTDOCS%%%%DOCSDIR%%/mc-quantities.doc
+%%PORTDOCS%%%%DOCSDIR%%/mc-reweight.doc
%%PORTDOCS%%%%DOCSDIR%%/mc-spec.doc
%%PORTDOCS%%%%DOCSDIR%%/mc-temp-filter.doc
%%PORTDOCS%%%%DOCSDIR%%/mc-temp-sched.doc
@@ -231,6 +233,7 @@
%%PORTDOCS%%%%DOCSDIR%%/xxx-circ.doc
%%PORTDOCS%%%%DOCSDIR%%/xxx-genp.doc
%%PORTDOCS%%%%DOCSDIR%%/xxx-grad-test.doc
+%%PORTDOCS%%%%DOCSDIR%%/xxx-his.doc
%%PORTDOCS%%%%DOCSDIR%%/xxx-hist.doc
%%PORTDOCS%%%%DOCSDIR%%/xxx-mc.doc
%%PORTDOCS%%%%DOCSDIR%%/xxx-plt.doc
@@ -277,9 +280,10 @@
%%PORTDOCS%%%%DOCSDIR%%/html/Release.1999-03-13.html
%%PORTDOCS%%%%DOCSDIR%%/html/Release.1999-12-06.html
%%PORTDOCS%%%%DOCSDIR%%/html/Release.2000-08-21.html
+%%PORTDOCS%%%%DOCSDIR%%/html/Release.2001-08-31.html
%%PORTDOCS%%%%DOCSDIR%%/html/Release.2003-06-29.html
+%%PORTDOCS%%%%DOCSDIR%%/html/Release.2004-11-10.html
%%PORTDOCS%%%%DOCSDIR%%/html/gp.html
-%%PORTDOCS%%%%DOCSDIR%%/html/Release.2001-08-31.html
%%PORTDOCS%%%%DOCSDIR%%/html/bvg-initial.html
%%PORTDOCS%%%%DOCSDIR%%/html/bvg-mc.html
%%PORTDOCS%%%%DOCSDIR%%/html/bvg-plt.html
@@ -329,6 +333,7 @@
%%PORTDOCS%%%%DOCSDIR%%/html/log.html
%%PORTDOCS%%%%DOCSDIR%%/html/mc-ais.html
%%PORTDOCS%%%%DOCSDIR%%/html/mc-quantities.html
+%%PORTDOCS%%%%DOCSDIR%%/html/mc-reweight.html
%%PORTDOCS%%%%DOCSDIR%%/html/mc-spec.html
%%PORTDOCS%%%%DOCSDIR%%/html/mc-temp-filter.html
%%PORTDOCS%%%%DOCSDIR%%/html/mc-temp-sched.html
@@ -366,6 +371,7 @@
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-circ.html
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-genp.html
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-grad-test.html
+%%PORTDOCS%%%%DOCSDIR%%/html/xxx-his.html
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-hist.html
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-mc.html
%%PORTDOCS%%%%DOCSDIR%%/html/xxx-plt.html
@@ -493,6 +499,7 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/scmds-nmet
%%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/scmds-nogaps
%%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/sdata
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/trace.txt
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/ex-mixdft
%%PORTDOCS%%%%EXAMPLESDIR%%/ex-netgp/README
%%PORTDOCS%%%%EXAMPLESDIR%%/ex-netgp/bcmds.gpl
>Release-Note:
>Audit-Trail:
>Unformatted:
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