From owner-svn-ports-head@freebsd.org Fri Jun 14 00:38:00 2019 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 517D915C1A81; Fri, 14 Jun 2019 00:38:00 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id E98707504C; Fri, 14 Jun 2019 00:37:59 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BF5D48359; Fri, 14 Jun 2019 00:37:59 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x5E0bxDt065389; Fri, 14 Jun 2019 00:37:59 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x5E0bx82065388; Fri, 14 Jun 2019 00:37:59 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201906140037.x5E0bx82065388@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Fri, 14 Jun 2019 00:37:59 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r504153 - head/biology/ncbi-blast+ X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/ncbi-blast+ X-SVN-Commit-Revision: 504153 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: E98707504C X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.95 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.998,0]; NEURAL_HAM_SHORT(-0.95)[-0.951,0]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 14 Jun 2019 00:38:00 -0000 Author: jwb Date: Fri Jun 14 00:37:59 2019 New Revision: 504153 URL: https://svnweb.freebsd.org/changeset/ports/504153 Log: biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.pl Modified: head/biology/ncbi-blast+/Makefile Modified: head/biology/ncbi-blast+/Makefile ============================================================================== --- head/biology/ncbi-blast+/Makefile Fri Jun 14 00:28:49 2019 (r504152) +++ head/biology/ncbi-blast+/Makefile Fri Jun 14 00:37:59 2019 (r504153) @@ -13,8 +13,6 @@ COMMENT= NCBI implementation of Basic Local Alignment LICENSE= PD LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE -BROKEN_powerpc64= fails to build: Error 2 - LIB_DEPENDS= libpcre.so:devel/pcre \ liblmdb.so:databases/lmdb \ liblzo2.so:archivers/lzo2 \ @@ -29,7 +27,8 @@ LIB_DEPENDS= libpcre.so:devel/pcre \ libgcrypt.so:security/libgcrypt \ libgpg-error.so:security/libgpg-error \ libsqlite3.so:databases/sqlite3 -RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils +RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \ + p5-JSON>=0:converters/p5-JSON USES= compiler:openmp gmake shebangfix perl5 python USE_LDCONFIG= yes @@ -48,10 +47,17 @@ CONFIGURE_ARGS= AR="ar cr" --without-boost --libdir=${ WRKSRC_SUBDIR= c++ +.include + +# Force newer GCC on platforms using GCC 4.2 as base +.if ${CHOSEN_COMPILER_TYPE} == gcc +USE_GCC= yes +.endif + post-install: @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra @${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11 @${RMDIR} ${STAGEDIR}${PREFIX}/lib/debug ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/ncbi-tools++/*.so -.include +.include