From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Mar 19 08:56:45 2005 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id EEF6616A4CE; Sat, 19 Mar 2005 08:56:45 +0000 (GMT) Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id 9395543D2F; Sat, 19 Mar 2005 08:56:45 +0000 (GMT) (envelope-from thierry@FreeBSD.org) Received: from freefall.freebsd.org (thierry@localhost [127.0.0.1]) by freefall.freebsd.org (8.13.3/8.13.3) with ESMTP id j2J8ujDM041473; Sat, 19 Mar 2005 08:56:45 GMT (envelope-from thierry@freefall.freebsd.org) Received: (from thierry@localhost) by freefall.freebsd.org (8.13.3/8.13.1/Submit) id j2J8ujtT041469; Sat, 19 Mar 2005 08:56:45 GMT (envelope-from thierry) Date: Sat, 19 Mar 2005 08:56:45 GMT From: Thierry Thomas Message-Id: <200503190856.j2J8ujtT041469@freefall.freebsd.org> To: giffunip@asme.org, thierry@FreeBSD.org, freebsd-ports-bugs@FreeBSD.org Subject: Re: ports/79005: Update math/fbm to version 20041110 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.1 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 19 Mar 2005 08:56:46 -0000 Synopsis: Update math/fbm to version 20041110 State-Changed-From-To: open->feedback State-Changed-By: thierry State-Changed-When: Sat Mar 19 08:50:02 GMT 2005 State-Changed-Why: This port installs scripts (e.g. bvg-circ) which begin with #!/bin/bash You should use something like sed inplace to replace these shebangs by ${LOCALBASE}/bin/bash and add a RUN_DEPENDS to a bash port, or let these scripts run with a base shell. Since I was here, the following patch pet portlint and display pkg-message when building from the port: --- fbm.diff begins here --- diff -urN math/fbm.orig/Makefile math/fbm/Makefile --- math/fbm.orig/Makefile Wed Mar 10 20:24:01 2004 +++ math/fbm/Makefile Sat Mar 19 09:44:08 2005 @@ -6,18 +6,18 @@ # PORTNAME= fbm -PORTVERSION= 20030629 +PORTVERSION= 20041110 CATEGORIES= math MASTER_SITES= ftp://ftp.cs.utoronto.ca/pub/radford/ -DISTNAME= ${PORTNAME}.2003-06-29 +DISTNAME= ${PORTNAME}.2004-11-10 EXTRACT_SUFX= .tar.Z MAINTAINER= ports@FreeBSD.org COMMENT= Flexible Bayesian Modeling and Markov Chain Sampling +NO_LATEST_LINK= yes USE_REINPLACE= yes -NO_LATEST_LINK= yes SCRIPTS = bvg-circ bvg-wrap dist-circ dist-wrap gp-circ \ gp-wrap dft-circ dft-wrap mix-circ mix-wrap \ net-circ net-wrap @@ -41,7 +41,7 @@ net-gd net-gen net-genp net-grad-test net-hist \ net-mc net-plt net-pred net-rej net-spec \ net-stepsizes net-tbl rand-seed series -TEXT= dft-genp mix-genp +OTHER= dft-genp mix-genp post-patch: @${REINPLACE_CMD} -e 's+%%CC%%+${CC}+g;' ${WRKSRC}/make.include @@ -61,14 +61,19 @@ @${INSTALL_DATA} ${WRKSRC}/util/randfile ${PREFIX}/share/fbm .if !defined(NOPORTDOCS) @${MKDIR} ${DOCSDIR} - @${CP} -R $(WRKSRC)/doc/* ${DOCSDIR} + @${CP} -R ${WRKSRC}/doc/* ${DOCSDIR} .for i in make-html make-manual rm-html @${RM} ${DOCSDIR}/${i} .endfor @${MKDIR} ${DOCSDIR}/html @${MV} ${DOCSDIR}/*.html ${DOCSDIR}/html @${MKDIR} ${EXAMPLESDIR} - @${CP} -R $(WRKSRC)/ex-* ${EXAMPLESDIR} + @${CP} -R ${WRKSRC}/ex-* ${EXAMPLESDIR} .endif + +post-install: + @${ECHO_MSG} + @${CAT} ${PKGMESSAGE} + @${ECHO_MSG} .include diff -urN math/fbm.orig/distinfo math/fbm/distinfo --- math/fbm.orig/distinfo Fri Jan 30 21:44:39 2004 +++ math/fbm/distinfo Sat Mar 19 09:36:39 2005 @@ -1,2 +1,2 @@ -MD5 (fbm.2003-06-29.tar.Z) = d883b507c88878757a3208c3fc72b630 -SIZE (fbm.2003-06-29.tar.Z) = 1374677 +MD5 (fbm.2004-11-10.tar.Z) = 9a76f13502de10a3888076718fbe074c +SIZE (fbm.2004-11-10.tar.Z) = 1422628 diff -urN math/fbm.orig/pkg-message math/fbm/pkg-message --- math/fbm.orig/pkg-message Tue Jul 22 11:39:50 2003 +++ math/fbm/pkg-message Sat Mar 19 09:36:39 2005 @@ -1,4 +1,4 @@ - Copyright (c) 1995-2003 by Radford M. Neal + Copyright (c) 1995-2004 by Radford M. Neal Permission is granted for anyone to copy, use, modify, or distribute these programs and accompanying documents for any purpose, provided this copyright diff -urN math/fbm.orig/pkg-plist math/fbm/pkg-plist --- math/fbm.orig/pkg-plist Sat Apr 17 17:15:35 2004 +++ math/fbm/pkg-plist Sat Mar 19 09:38:31 2005 @@ -97,8 +97,8 @@ bin/net-wrap bin/rand-seed bin/series -share/fbm/randfile -@dirrm share/fbm +%%DATADIR%%/randfile +@dirrm %%DATADIR%% %%PORTDOCS%%%%DOCSDIR%%/Acknowledgements.doc %%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT %%PORTDOCS%%%%DOCSDIR%%/Contents.doc @@ -142,6 +142,7 @@ %%PORTDOCS%%%%DOCSDIR%%/Release.2000-08-21.doc %%PORTDOCS%%%%DOCSDIR%%/Release.2001-08-31.doc %%PORTDOCS%%%%DOCSDIR%%/Release.2003-06-29.doc +%%PORTDOCS%%%%DOCSDIR%%/Release.2004-11-10.doc %%PORTDOCS%%%%DOCSDIR%%/bvg-initial.doc %%PORTDOCS%%%%DOCSDIR%%/bvg-mc.doc %%PORTDOCS%%%%DOCSDIR%%/bvg-plt.doc @@ -193,6 +194,7 @@ %%PORTDOCS%%%%DOCSDIR%%/manual %%PORTDOCS%%%%DOCSDIR%%/mc-ais.doc %%PORTDOCS%%%%DOCSDIR%%/mc-quantities.doc +%%PORTDOCS%%%%DOCSDIR%%/mc-reweight.doc %%PORTDOCS%%%%DOCSDIR%%/mc-spec.doc %%PORTDOCS%%%%DOCSDIR%%/mc-temp-filter.doc %%PORTDOCS%%%%DOCSDIR%%/mc-temp-sched.doc @@ -231,6 +233,7 @@ %%PORTDOCS%%%%DOCSDIR%%/xxx-circ.doc %%PORTDOCS%%%%DOCSDIR%%/xxx-genp.doc %%PORTDOCS%%%%DOCSDIR%%/xxx-grad-test.doc +%%PORTDOCS%%%%DOCSDIR%%/xxx-his.doc %%PORTDOCS%%%%DOCSDIR%%/xxx-hist.doc %%PORTDOCS%%%%DOCSDIR%%/xxx-mc.doc %%PORTDOCS%%%%DOCSDIR%%/xxx-plt.doc @@ -277,9 +280,10 @@ %%PORTDOCS%%%%DOCSDIR%%/html/Release.1999-03-13.html %%PORTDOCS%%%%DOCSDIR%%/html/Release.1999-12-06.html %%PORTDOCS%%%%DOCSDIR%%/html/Release.2000-08-21.html +%%PORTDOCS%%%%DOCSDIR%%/html/Release.2001-08-31.html %%PORTDOCS%%%%DOCSDIR%%/html/Release.2003-06-29.html +%%PORTDOCS%%%%DOCSDIR%%/html/Release.2004-11-10.html %%PORTDOCS%%%%DOCSDIR%%/html/gp.html -%%PORTDOCS%%%%DOCSDIR%%/html/Release.2001-08-31.html %%PORTDOCS%%%%DOCSDIR%%/html/bvg-initial.html %%PORTDOCS%%%%DOCSDIR%%/html/bvg-mc.html %%PORTDOCS%%%%DOCSDIR%%/html/bvg-plt.html @@ -329,6 +333,7 @@ %%PORTDOCS%%%%DOCSDIR%%/html/log.html %%PORTDOCS%%%%DOCSDIR%%/html/mc-ais.html %%PORTDOCS%%%%DOCSDIR%%/html/mc-quantities.html +%%PORTDOCS%%%%DOCSDIR%%/html/mc-reweight.html %%PORTDOCS%%%%DOCSDIR%%/html/mc-spec.html %%PORTDOCS%%%%DOCSDIR%%/html/mc-temp-filter.html %%PORTDOCS%%%%DOCSDIR%%/html/mc-temp-sched.html @@ -366,6 +371,7 @@ %%PORTDOCS%%%%DOCSDIR%%/html/xxx-circ.html %%PORTDOCS%%%%DOCSDIR%%/html/xxx-genp.html %%PORTDOCS%%%%DOCSDIR%%/html/xxx-grad-test.html +%%PORTDOCS%%%%DOCSDIR%%/html/xxx-his.html %%PORTDOCS%%%%DOCSDIR%%/html/xxx-hist.html %%PORTDOCS%%%%DOCSDIR%%/html/xxx-mc.html %%PORTDOCS%%%%DOCSDIR%%/html/xxx-plt.html @@ -493,6 +499,7 @@ %%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/scmds-nmet %%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/scmds-nogaps %%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/sdata +%%PORTDOCS%%%%EXAMPLESDIR%%/ex-mixdft/trace.txt %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/ex-mixdft %%PORTDOCS%%%%EXAMPLESDIR%%/ex-netgp/README %%PORTDOCS%%%%EXAMPLESDIR%%/ex-netgp/bcmds.gpl --- fbm.diff ends here --- http://www.freebsd.org/cgi/query-pr.cgi?pr=79005