Date: Fri, 12 Sep 2014 00:34:07 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][science/libghemical] Failed for libghemical-3.0.0_3 in configure Message-ID: <201409120034.s8C0Y7Yw091162@beefy1.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: head/science/libghemical/Makefile 364199 2014-08-06 16:06:22Z amdmi3 $ Log URL: http://beefy1.isc.freebsd.org/data/head-i386-default/2014-09-11_16h52m48s/logs/libghemical-3.0.0_3.log Build URL: http://beefy1.isc.freebsd.org/build.html?mastername=head-i386-default&build=2014-09-11_16h52m48s Log: ====>> Building science/libghemical build started at Fri Sep 12 00:33:23 UTC 2014 port directory: /usr/ports/science/libghemical building for: FreeBSD head-i386-default-job-02 11.0-CURRENT FreeBSD 11.0-CURRENT r271341 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/libghemical/Makefile 364199 2014-08-06 16:06:22Z amdmi3 $ Poudriere version: 3.1-pre Host OSVERSION: 1100027 Jail OSVERSION: 1100031 !!! Jail is newer than host. (Jail: 1100031, Host: 1100027) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100031 UNAME_v=FreeBSD 11.0-CURRENT r271341 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libghemical-3.0.0_3 OLDPWD=/root PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" MAKE=gmake PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" LIBS="" CXX="c++" CXXFL AGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBGHEMICAL_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> libghemical-3.0.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.3.7.txz [head-i386-default-job-02] Installing pkg-1.3.7... done Message for pkg-1.3.7: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of libghemical-3.0.0_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by libghemical-3.0.0_3 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by libghemical-3.0.0_3 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by libghemical-3.0.0_3 for building ===> Extracting for libghemical-3.0.0_3 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libghemical-3.0.0_3 =========================================================================== =======================<phase: build-depends >============================ ===> libghemical-3.0.0_3 depends on executable: obabel - not found ===> Verifying install for obabel in /usr/ports/science/openbabel ===> Installing existing package /packages/All/openbabel-2.3.2_1.txz [head-i386-default-job-02] Installing libxml2-2.9.1_1... done [head-i386-default-job-02] Installing indexinfo-0.2... done [head-i386-default-job-02] Installing gettext-0.18.3.1_1... done [head-i386-default-job-02] Installing readline-6.3.8... done [head-i386-default-job-02] Installing python27-2.7.8_4... done [head-i386-default-job-02] Installing openbabel-2.3.2_1... done Message for python27-2.7.8_4: ===================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===================================================================== ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on executable: intltool-update - not found ===> Verifying install for intltool-update in /usr/ports/textproc/intltool ===> Installing existing package /packages/All/intltool-0.50.2.txz [head-i386-default-job-02] Installing expat-2.1.0_1... done [head-i386-default-job-02] Installing perl5-5.16.3_11... done [head-i386-default-job-02] Installing p5-XML-Parser-2.41_1... done [head-i386-default-job-02] Installing intltool-0.50.2... done ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on executable: ld - found ===> libghemical-3.0.0_3 depends on executable: gfortran47 - not found ===> Verifying install for gfortran47 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.7.4.txz [head-i386-default-job-02] Installing binutils-2.24_1... done [head-i386-default-job-02] Installing gcc-ecj-4.5... done [head-i386-default-job-02] Installing gmp-5.1.3_2... done [head-i386-default-job-02] Installing mpfr-3.1.2_2... done [head-i386-default-job-02] Installing mpc-1.0.2_1... done [head-i386-default-job-02] Installing gcc-4.7.4... done Message for gcc-4.7.4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz [head-i386-default-job-02] Installing gmake-3.82_1... done ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on executable: pkgconf - not found ===> Verifying install for pkgconf in /usr/ports/devel/pkgconf <snip> ===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto ===> Installing existing package /packages/All/dri2proto-2.8.txz [head-i386-default-job-02] Installing dri2proto-2.8... done ===> Returning to build of libghemical-3.0.0_3 =========================================================================== =======================<phase: lib-depends >============================ ===> libghemical-3.0.0_3 depends on shared library: libmpqc.so - not found ===> Verifying for libmpqc.so in /usr/ports/science/mpqc ===> Installing existing package /packages/All/mpqc-2.3.1_22.txz [head-i386-default-job-02] Installing blas-3.4.2_2... done [head-i386-default-job-02] Installing lapack-3.4.2_2... done [head-i386-default-job-02] Installing libint-1.1.4_1... done [head-i386-default-job-02] Installing mpqc-2.3.1_22... done ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on shared library: libf2c.so - not found ===> Verifying for libf2c.so in /usr/ports/lang/f2c ===> Installing existing package /packages/All/f2c-20060810_4.txz [head-i386-default-job-02] Installing f2c-20060810_4... done ===> Returning to build of libghemical-3.0.0_3 ===> libghemical-3.0.0_3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so.9) ===> libghemical-3.0.0_3 depends on shared library: libGL.so - not found ===> Verifying for libGL.so in /usr/ports/graphics/libGL ===> Installing existing package /packages/All/libGL-9.1.7_1.txz [head-i386-default-job-02] Installing kbproto-1.0.6... done [head-i386-default-job-02] Installing xproto-7.0.26... done [head-i386-default-job-02] Installing libXau-1.0.8_2... done [head-i386-default-job-02] Installing libXdmcp-1.1.1_2... done [head-i386-default-job-02] Installing libpthread-stubs-0.3_5... done [head-i386-default-job-02] Installing libxcb-1.10_2... done [head-i386-default-job-02] Installing libX11-1.6.2_2,1... done [head-i386-default-job-02] Installing damageproto-1.2.1... done [head-i386-default-job-02] Installing fixesproto-5.0... done [head-i386-default-job-02] Installing libXfixes-5.0.1_2... done [head-i386-default-job-02] Installing libXdamage-1.1.4_2... done [head-i386-default-job-02] Installing xextproto-7.3.0... done [head-i386-default-job-02] Installing libXext-1.3.2_2,1... done [head-i386-default-job-02] Installing xf86vidmodeproto-2.3.1... done [head-i386-default-job-02] Installing libXxf86vm-1.1.3_2... done [head-i386-default-job-02] Installing pciids-20140830... done [head-i386-default-job-02] Installing libpciaccess-0.13.2_2... done [head-i386-default-job-02] Installing libdrm-2.4.52_1,1... done [head-i386-default-job-02] Installing libxshmfence-1.1_3... done [head-i386-default-job-02] Installing libglapi-9.1.7... done [head-i386-default-job-02] Installing libGL-9.1.7_1... done ===> Returning to build of libghemical-3.0.0_3 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libghemical-3.0.0_3 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/configure configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking build system type... i386-portbld-freebsd11.0 checking host system type... i386-portbld-freebsd11.0 checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C preprocessor... cpp checking how to run the C++ preprocessor... c++ -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for ar... /usr/local/bin/ar checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.50.2 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/bin/perl checking for perl >= 5.8.1... 5.16.3 checking for XML::Parser... ok checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... no *** Could not run SC test program, checking why... *** The test program compiled, but did not run. This usually means *** that the run-time linker is not finding SC or finding the wrong *** version of SC. If it is not finding SC, you'll need to set your *** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point *** to the installed location Also, make sure you have run ldconfig if that *** is required on your system *** *** If you have an old version installed, it is best to remove it, although *** you may also be able to get things to work by modifying LD_LIBRARY_PATH *** *** If you have a RedHat 5.0 system, you should remove the SC package that *** came with the system with the command *** *** rpm --erase --nodeps sc sc-devel configure: error: Cannot find proper SC version ===> Script "configure" failed unexpectedly. Please report the problem to ports@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/science/libghemical
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